BQ623476

Overview
NameBQ623476
Unique NameBQ623476
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length490
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig242 contig Csv1_Contig242:391..879. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623476 vs. ExPASy Swiss-Prot
Match: RL10_MOUSE (60S ribosomal protein L10 OS=Mus musculus GN=Rpl10 PE=2 SV=3)

HSP 1 Score: 110.153 bits (274), Expect = 5.220e-24
Identity = 52/88 (59.09%), Postives = 64/88 (72.73%), Query Frame = 3
Query:   18 FGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 281
            FGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:  119 FGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYIPNRGPL 206          
BLAST of BQ623476 vs. ExPASy Swiss-Prot
Match: RL10_MACFA (60S ribosomal protein L10 OS=Macaca fascicularis GN=RPL10 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 5.220e-24
Identity = 52/88 (59.09%), Postives = 64/88 (72.73%), Query Frame = 3
Query:   18 FGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 281
            FGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:  119 FGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYIPNRGPL 206          
BLAST of BQ623476 vs. ExPASy Swiss-Prot
Match: RL10_HUMAN (60S ribosomal protein L10 OS=Homo sapiens GN=RPL10 PE=1 SV=4)

HSP 1 Score: 110.153 bits (274), Expect = 5.220e-24
Identity = 52/88 (59.09%), Postives = 64/88 (72.73%), Query Frame = 3
Query:   18 FGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 281
            FGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:  119 FGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYIPNRGPL 206          
BLAST of BQ623476 vs. ExPASy Swiss-Prot
Match: RL10_CAEEL (60S ribosomal protein L10 OS=Caenorhabditis elegans GN=rpl-10 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 8.904e-24
Identity = 53/90 (58.89%), Postives = 64/90 (71.11%), Query Frame = 3
Query:   18 FGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQ 287
            +GKPQG  ARV IG +L S+R K+ N  HA EA RRAKFKFPGRQ I+ SRKWGFTK+ R DY R ++E R+  DGV  +L   HGPL +
Sbjct:  119 YGKPQGLVARVDIGDILFSMRIKEGNVKHAIEAFRRAKFKFPGRQIIVSSRKWGFTKWDREDYERMRAEGRLRSDGVGVQLQREHGPLTK 208          
BLAST of BQ623476 vs. ExPASy Swiss-Prot
Match: RL10_PONAB (60S ribosomal protein L10 OS=Pongo abelii GN=RPL10 PE=2 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 1.163e-23
Identity = 52/88 (59.09%), Postives = 63/88 (71.59%), Query Frame = 3
Query:   18 FGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 281
            FGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K     GPL
Sbjct:  119 FGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYTPNRGPL 206          
BLAST of BQ623476 vs. ExPASy Swiss-Prot
Match: RL10L_HUMAN (60S ribosomal protein L10-like OS=Homo sapiens GN=RPL10L PE=1 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 1.163e-23
Identity = 51/88 (57.95%), Postives = 64/88 (72.73%), Query Frame = 3
Query:   18 FGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 281
            FGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    ++  ++PDG   K +  HGPL
Sbjct:  119 FGKPQGTVARVHIGQVIMSIRTKLQNEEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAKKCLIPDGCGVKYVPSHGPL 206          
BLAST of BQ623476 vs. ExPASy Swiss-Prot
Match: RL10_CHICK (60S ribosomal protein L10 (Fragment) OS=Gallus gallus GN=RPL10 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.591e-23
Identity = 50/88 (56.82%), Postives = 63/88 (71.59%), Query Frame = 3
Query:   18 FGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 281
            FGKPQGT ARV +GQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+   +    ++ R++PDG   K +   GPL
Sbjct:  114 FGKPQGTVARVHMGQVIMSIRTKAQNKEHVVEALRRAKFKFPGRQKIHISKKWGFTKFNADAFEEMVAQKRLIPDGCGVKYVPGRGPL 201          
BLAST of BQ623476 vs. ExPASy Swiss-Prot
Match: RL10L_BOVIN (60S ribosomal protein L10-like OS=Bos taurus GN=RPL10L PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.384e-23
Identity = 51/88 (57.95%), Postives = 64/88 (72.73%), Query Frame = 3
Query:   18 FGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 281
            FGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    ++ R++PDG   K +   GPL
Sbjct:  119 FGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDKVAKKRLIPDGCGVKYVPNRGPL 206          
BLAST of BQ623476 vs. ExPASy Swiss-Prot
Match: RL10_DICDI (60S ribosomal protein L10 OS=Dictyostelium discoideum GN=rpl10 PE=3 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 5.772e-23
Identity = 48/90 (53.33%), Postives = 67/90 (74.44%), Query Frame = 3
Query:   18 FGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQ 287
            FGKP GT ARV IGQ++ S+R +D+   +  EALRR+ +KFPGRQKI+VS+KWGFT ++R  Y + K++ R++ DG N K++  HG LAQ
Sbjct:  119 FGKPMGTVARVNIGQIIFSIRTRDNMLANVVEALRRSSYKFPGRQKIVVSKKWGFTAYNREAYQKLKADGRLMNDGANVKVITNHGTLAQ 208          
BLAST of BQ623476 vs. ExPASy Swiss-Prot
Match: RL10L_MOUSE (60S ribosomal protein L10-like OS=Mus musculus GN=Rpl10l PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 5.772e-23
Identity = 51/88 (57.95%), Postives = 63/88 (71.59%), Query Frame = 3
Query:   18 FGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 281
            FGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +  R++PDG   K +   GPL
Sbjct:  119 FGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDKVAAKRLIPDGCGVKYIPERGPL 206          
The following BLAST results are available for this feature:
BLAST of BQ623476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
RL10_MOUSE5.220e-2459.0960S ribosomal protein L10 OS=Mus musculus GN=Rpl10... [more]
RL10_MACFA5.220e-2459.0960S ribosomal protein L10 OS=Macaca fascicularis G... [more]
RL10_HUMAN5.220e-2459.0960S ribosomal protein L10 OS=Homo sapiens GN=RPL10... [more]
RL10_CAEEL8.904e-2458.8960S ribosomal protein L10 OS=Caenorhabditis elegan... [more]
RL10_PONAB1.163e-2359.0960S ribosomal protein L10 OS=Pongo abelii GN=RPL10... [more]
RL10L_HUMAN1.163e-2357.9560S ribosomal protein L10-like OS=Homo sapiens GN=... [more]
RL10_CHICK2.591e-2356.8260S ribosomal protein L10 (Fragment) OS=Gallus gal... [more]
RL10L_BOVIN3.384e-2357.9560S ribosomal protein L10-like OS=Bos taurus GN=RP... [more]
RL10_DICDI5.772e-2353.3360S ribosomal protein L10 OS=Dictyostelium discoid... [more]
RL10L_MOUSE5.772e-2357.9560S ribosomal protein L10-like OS=Mus musculus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00567 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00567 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623476 ID=BQ623476; Name=BQ623476; organism=Citrus sinensis; type=EST; length=490bp
TGGAATGAGGGGTGCCTTTTGGAAAGCCCCAAGGAACCTGTGCTCGTGTT
GCTATCGGGCAGGTCTTGCTTTCTGTCCGTTGCAAGGATAGTAACAGCCA
CCATGCTCAGGAGGCCCTTCGCCGTGCTAAGTTCAAGTTTCCTGGTCGTC
AAAAGATTATTGTCAGCAGGAAATGGGGATTTACCAAGTTCAGCCGTGCT
GATTATCTGCGGTGGAAGTCGGAGAACAGGATTGTCCCAGATGGTGTGAA
TGCCAAGCTTCTCGGATGTCATGGTCCTTTGGCTCAACGTCAACCCTGGA
AGAGCTTTCCTGGAAGCAACAACCTAAGATATTTACTGTCTCAAAATAGC
AGAGCTGGGTCTACTGTCTAGTTTATTATTTTCCATTTCGTACCTTTTCT
CAGTTGAACTGGATTTCTCAAGTTGAAGTGACATGTTTCTTTGGTTTAAC
TATGTGATCCTTGCAGTTGTTTTAGTGATTTGCAATTTGC
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