BQ623482
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of BQ623482 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 5.116e-28 Identity = 77/190 (40.53%), Postives = 101/190 (53.16%), Query Frame = 2 Query: 62 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENLYDHIADPVANN 625 P++L G PGD+G+D GL+ PE F + +E E+ H RWAML G + PE L G W KA +G YLGNP + ++ I A + + + F E R AFDPLG + DP +F ELK+KE+KNGRLAM + GF V Q+ G GP+ENL H+ADP NN Sbjct: 55 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQR---TMEKDPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 232
BLAST of BQ623482 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 8.726e-28 Identity = 84/217 (38.71%), Postives = 112/217 (51.61%), Query Frame = 2 Query: 50 SEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPEILSKNGVKFGEA--VWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR-----------------IXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 625 S+Q+ SYL G PGD+G+D GLS DPE F + + L EVI+ R+AMLGA G + PEIL K G+ E WF+ G I G +Y + ++ ++ LMGF E R + F+PLG D ELK+KE+KNGRLAM ++ G+F+QA+VTG GP +NL DH+ADPV NN Sbjct: 59 SKQSLSYLDGRLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNN 265
BLAST of BQ623482 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.376e-25 Identity = 62/106 (58.49%), Postives = 71/106 (66.98%), Query Frame = 2 Query: 317 LIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA---FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 625 LIHA+S+LAI A QV+LMG VEGYR FDPLGLADDPD F ELKVKE+KNGRLAM M GF+ QAIVTG+GP+EN H+ DP A+N Sbjct: 5 LIHAKSLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDPSAHN 110
BLAST of BQ623482 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 2.459e-22 Identity = 72/189 (38.10%), Postives = 92/189 (48.68%), Query Frame = 2 Query: 59 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAG-AQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVAN 622 +P YLTG GD G+D GL+ DPE + E+++ RWAMLG G + PE+ +K G+ W+ AG Q F+ ++ L H I W + G V I F+PL A P Q E K KEL NGRLAM + GF VQ VTGKGP ENL H++DP N Sbjct: 63 SPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI-INVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPKGEVGYPGGIFNPLNFA--PTQ--EAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHN 244
BLAST of BQ623482 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 3.006e-20 Identity = 78/241 (32.37%), Postives = 105/241 (43.57%), Query Frame = 2 Query: 23 DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPV 616 DRP + ++P YL G GDYG+D GL E AKN RE E+IH RWAML LG + E L+ GV W AG +G YLG P +++ I +V+++G++E R FDPLGLA DP + A+L++ E+K+ RLAM GF VQA TGKGP+ N H++DP+ Sbjct: 51 DRPLWFP--GAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLT--GV-----TWQDAGKVELVDGS-SYLGQPLPFSISTLIWI---EVLVIGYIEFQR--NAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPL 276
BLAST of BQ623482 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 6.697e-20 Identity = 80/242 (33.06%), Postives = 107/242 (44.21%), Query Frame = 2 Query: 23 DRPK-YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPV 616 DRP Y G S P +L G GDYG+D GL E AKN RE E+IH RWAML LG + E L+ GV W AG +G YLG P +++ I +V+++G++E R FDPLGLA DP++ A+L++ E+K+ RLAM + GF VQA TGKGP+ N H++DP+ Sbjct: 54 DRPLWYPGAIS---PDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLT--GV-----TWQDAGKVELVDGS-SYLGQPLPFSISTLIWI---EVLVIGYIEFQR--NAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPL 279
BLAST of BQ623482 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.142e-19 Identity = 60/190 (31.58%), Postives = 89/190 (46.84%), Query Frame = 2 Query: 56 QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 625 + P+ LTGE+P D G+D L+ADP+ +A+ R EV H R AML +GC+ PE+L G+ WF+AG + L + + + E +R FDPL L D + A E+KNGRLA+ ++ G Q + TG+ P+ NL H+A+P+ N Sbjct: 195 EPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAGDSVDG------------------LKLGFITMAIAAPTEYWRGQGGFNWQKGELDRSYPGFDPLNLTTDYTRAA-----EVKNGRLALTAVAGLTAQYLATGESPLANLSAHLANPIGAN 354
BLAST of BQ623482 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 2.912e-15 Identity = 56/148 (37.84%), Postives = 77/148 (52.03%), Query Frame = 2 Query: 149 RELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 592 RE E+IH RWAMLG LG + E L+ G+ W AG EG YLG P +++ I +V+++G++E R FDPLGLA DP++ LK+ E+K+ RLAM + F +QA TGKGP+ L Sbjct: 138 RECELIHGRWAMLGTLGAIAVEALT--GI-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVLVVGYIEFQR---NSELDPEKRIYPGGYFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFL 271
BLAST of BQ623482 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.725e-13 Identity = 62/204 (30.39%), Postives = 80/204 (39.22%), Query Frame = 2 Query: 62 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR---------------------IXXXXXXXXXXXXXXXXAFDPLGLA---------DDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 583 P +L G PGDYG+D GL DP RE E+IH RWAM LG G + WF+AGA +P I S + Q++LMG+VE R FDPL LA D ++ LKV E+K+ RLAM +M F+ +A GK P+ Sbjct: 68 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLIFYFEA-GQGKTPL 251
BLAST of BQ623482 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 6.071e-13 Identity = 61/204 (29.90%), Postives = 81/204 (39.71%), Query Frame = 2 Query: 62 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR---------------------IXXXXXXXXXXXXXXXXAFDPLGLA---------DDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 583 P +L G PGD+G+D GL DP RE E+IH RWAML LG G + WF+AGA +P + S + Q++LMG+VE R FDPL LA D D+ LK+ E+K+ RLAM +M F+ +A GK P+ Sbjct: 73 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFV-------GQAWTGIPWFEAGA------------DPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIFYFEA-GQGKTPL 256 The following BLAST results are available for this feature:
BLAST of BQ623482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 82
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Sequences
The
following sequences are available for this feature:
EST sequence >BQ623482 ID=BQ623482; Name=BQ623482; organism=Citrus sinensis; type=EST; length=653bpback to top |