BQ623482

Overview
NameBQ623482
Unique NameBQ623482
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1260 contig Csv1_Contig1260:607..1259. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623482 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.307e-12
Identity = 60/204 (29.41%), Postives = 81/204 (39.71%), Query Frame = 2
Query:   62 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR---------------------IXXXXXXXXXXXXXXXXAFDPLGLA---------DDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 583
            P +L G  PGD+G+D  GL  DP      RE E+IH RWAM   LG          G  +    WF+AGA            +P  I   S  ++   Q++LMG+VE  R                                       FDPL LA          D ++   LK+ E+K+ RLAM +M  F+ +A   GK P+
Sbjct:   68 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLIFYFEA-GQGKTPL 251          
BLAST of BQ623482 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 3.013e-12
Identity = 70/223 (31.39%), Postives = 90/223 (40.36%), Query Frame = 2
Query:   62 PSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN----------------------------------RELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFA-ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 592
            P +L G  PGD G+D  GLS   E             AKN                                  RE E+IH RWAML  LG +  E  +  GV      W +AG       G  Y G   L    SI  +   +V+L+G  E YR                  FDPL LA + ++ A  LK  E+K+ RLAM S FG+ VQA+ TG+G + +L
Sbjct:   60 PEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAE--ATTGVS-----WVEAGKVELD--GASYAG---LSLPFSITQLIWIEVILVGGAEFYR---NSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSL 267          
The following BLAST results are available for this feature:
BLAST of BQ623482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
CB4B_SOLLC2.307e-1229.41Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
CB29_CHLRE3.013e-1231.39Chlorophyll a-b binding protein CP29 OS=Chlamydomo... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00573 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00573 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623482 ID=BQ623482; Name=BQ623482; organism=Citrus sinensis; type=EST; length=653bp
CCAGAGCATCTGGTACGGCCCAGACCGCCCAAAGTACTTGGGACCATTCT
CTGAGCAAACACCATCATACTTGACTGGTGAGTTCCCTGGTGACTATGGC
TGGGATACCGCTGGTTTATCAGCAGACCCCGAGACATTTGCTAAGAACCG
TGAGCTAGAGGTGATCCACAGCAGATGGGCAATGCTTGGAGCTCTTGGCT
GCGTCTTCCCTGAAATCCTCTCCAAGAATGGAGTGAAGTTCGGCGAAGCA
GTTTGGTTCAAGGCTGGCGCTCAAATCTTCTCTGAAGGTGGCCTTGACTA
TCTTGGCAACCCCAACCTCATTCATGCTCAGAGCATTTTGGCTATCTGGG
CCTGCCAGGTTGTGCTCATGGGTTTTGTTGAAGGATACAGAATTGGTGGC
GGTCCTCTTGGTGAAGGACTTGACCCACTTTACCCTGGTGGTGCTTTTGA
CCCACTTGGTTTGGCTGATGACCCCGATCAATTTGCTGAGTTGAAGGTCA
AGGAGCTCAAGAATGGCCGTCTGGCTATGTTCTCCATGTTTGGATTCTTT
GTTCAGGCTATTGTCACTGGGAAGGGTCCAATTGAGAACCTCTACGACCA
CATTGCTGATCCTGTGGCCAACAATGCCTGGGCTTATGCCACTAACTTTG
TTC
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