BQ623489

Overview
NameBQ623489
Unique NameBQ623489
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length525
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623489 vs. ExPASy Swiss-Prot
Match: IRAK1_BOVIN (Interleukin-1 receptor-associated kinase 1 OS=Bos taurus GN=IRAK1 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 3.326e-17
Identity = 47/116 (40.52%), Postives = 70/116 (60.34%), Query Frame = 2
Query:    5 LDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDFCEAIVGDFGLAKLLDHSDSHV--------TTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGMRAL 328
            L W  R  I +G AR + +LH+   P +IH DVK++NVLLD+     +GDFGLA+L   + ++         T  VRGT+ ++  EY+ TG+ +  TD F FG++LLE + G RA+
Sbjct:  310 LSWPQRLDILLGTARAIQFLHQD-SPSLIHGDVKSSNVLLDERLMPKLGDFGLARLSRFTGANPGQSSSVARTRTVRGTLAYLPEEYVKTGRLAVDTDTFSFGVVLLETLAGQRAV 424          
BLAST of BQ623489 vs. ExPASy Swiss-Prot
Match: EFR_ARATH (LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.326e-17
Identity = 49/104 (47.12%), Postives = 62/104 (59.62%), Query Frame = 2
Query:   29 IAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDFCEAIVGDFGLAKLLDHSD------SHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGMR 322
            IAI  A  L YLH  C   + H D+K +N+LLDD   A V DFGLA+LL   D         +  VRGT+G+ APEY   GQ S + DV+ FGILLLE+ +G +
Sbjct:  826 IAIDVASALEYLHVHCHDPVAHCDIKPSNILLDDDLTAHVSDFGLAQLLYKYDRESFLNQFSSAGVRGTIGYAAPEYGMGGQPSIQGDVYSFGILLLEMFSGKK 929          
BLAST of BQ623489 vs. ExPASy Swiss-Prot
Match: IMK3_ARATH (Probable leucine-rich repeat receptor-like protein kinase IMK3 OS=Arabidopsis thaliana GN=IMK3 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.673e-17
Identity = 53/172 (30.81%), Postives = 90/172 (52.33%), Query Frame = 2
Query:    5 LDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDFCEAIVGDFGLAKLLDHSDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGMRALEFGKSINQKGAMLEWXXXXXXXXXXXXXXDRELGSNYDRI--EVGEILQVALLCTQYLPVHRPK 514
            ++W TR  +  G ARGL YLH   +  IIH ++ ++NVLLD+   A + D+GL++L+  +      A  G +G+ APE     +++ KTDV+  G+++LEL+TG    E    ++    + +W              D EL ++ + +  E+   L++AL C    P  RP+
Sbjct:  583 INWPTRMSLIKGMARGLFYLHTHAN--IIHGNLTSSNVLLDENITAKISDYGLSRLMTAAAGSSVIATAGALGYRAPELSKLKKANTKTDVYSLGVIILELLTGKSPSEALNGVD----LPQWVATAVKEEWTNEVFDLELLNDVNTMGDEILNTLKLALHCVDATPSTRPE 748          
BLAST of BQ623489 vs. ExPASy Swiss-Prot
Match: IRAK1_MOUSE (Interleukin-1 receptor-associated kinase 1 OS=Mus musculus GN=Irak1 PE=1 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 9.677e-17
Identity = 44/116 (37.93%), Postives = 69/116 (59.48%), Query Frame = 2
Query:    5 LDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDFCEAIVGDFGLAKLLDHSDSHV--------TTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGMRAL 328
            L W  R  I +G AR + +LH+   P +IH D+K++NVLLD+     +GDFGLA+    + +          T+ VRGT+ ++  EY+ TG+ +  TD F FG+++LE + G RA+
Sbjct:  310 LSWPQRLDILLGTARAIQFLHQD-SPSLIHGDIKSSNVLLDERLMPKLGDFGLARFSRFAGAKASQSSTVARTSTVRGTLAYLPEEYIKTGRLAVDTDTFSFGVVILETLAGQRAV 424          
BLAST of BQ623489 vs. ExPASy Swiss-Prot
Match: IRAK1_HUMAN (Interleukin-1 receptor-associated kinase 1 OS=Homo sapiens GN=IRAK1 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 9.677e-17
Identity = 45/117 (38.46%), Postives = 69/117 (58.97%), Query Frame = 2
Query:    5 LDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDFCEAIVGDFGLAKLLDHSDSHV--------TTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGMRALE 331
            L W  R  I +G AR + +LH+   P +IH D+K++NVLLD+     +GDFGLA+    + S          T  VRGT+ ++  EY+ TG+ +  TD F FG+++LE + G RA++
Sbjct:  310 LSWPQRLDILLGTARAIQFLHQD-SPSLIHGDIKSSNVLLDERLTPKLGDFGLARFSRFAGSSPSQSSMVARTQTVRGTLAYLPEEYIKTGRLAVDTDTFSFGVVVLETLAGQRAVK 425          
BLAST of BQ623489 vs. ExPASy Swiss-Prot
Match: PUB53_ARATH (Putative U-box domain-containing protein 53 OS=Arabidopsis thaliana GN=PUB53 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.651e-16
Identity = 57/176 (32.39%), Postives = 90/176 (51.14%), Query Frame = 2
Query:    5 LDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDFCEAIVGDFGLAKLLDHSDSHVT-------TAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGMRALEFGKSINQKGAMLEWXXXXXXXXXXXXXXDRELGSNYDRIEVGEILQVALLCTQYLPVHRP 511
            + W  R RIA   A  L++LH+     IIHRD+K AN+LL+    + VGD GL+ ++  +D   T       T+  GT+ +I PEY  TG+ S K+DV+ FG+++L+L+TG +A+    ++       E               D + G N+   E  ++  +AL CT+     RP
Sbjct:  551 IPWFVRLRIAWEVASALVFLHKSKPTPIIHRDLKPANILLNHNFVSKVGDVGLSTMIQAADPLSTKFTMYKQTSPVGTLCYIDPEYQRTGRISPKSDVYAFGMIILQLLTGQQAMALTYTV-------ETAMENNNDDELIQILDEKAG-NWPIEETRQLAALALQCTELRSKDRP 718          
BLAST of BQ623489 vs. ExPASy Swiss-Prot
Match: PUB33_ARATH (U-box domain-containing protein 33 OS=Arabidopsis thaliana GN=PUB33 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 2.156e-16
Identity = 46/115 (40.00%), Postives = 65/115 (56.52%), Query Frame = 2
Query:    5 LDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDFCEAIVGDFGLAKLLDHSDSH-VTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGMRALEFGKSI 346
            L W  R RIA      L++LH      ++H D+K AN+LLD    + + DFG   LL  + S  V T V GTV ++ PE  S+G+ + K+DV+ FGI+LL L+TG  AL     +
Sbjct:  572 LSWQNRVRIATEICAALVFLHSNKAHSLVHGDLKPANILLDSNLVSKLSDFGTCSLLHPNGSKSVRTDVTGTVAYLDPEASSSGELTPKSDVYSFGIILLRLLTGRPALRISNEV 686          
BLAST of BQ623489 vs. ExPASy Swiss-Prot
Match: TMKL1_ARATH (Putative kinase-like protein TMKL1 OS=Arabidopsis thaliana GN=TMKL1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.677e-16
Identity = 44/117 (37.61%), Postives = 74/117 (63.25%), Query Frame = 2
Query:    2 ALDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDFCEAIVGDFGLAKLLDHSDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGMRALEFGKSINQ 352
            AL+W  R +IA+G ARGL YLH   +  IIH ++++ NVL+DDF  A + +FGL K++  + +    +   + G+ APE     + + ++DV+ FGILLLE++ G +  + G++ N+
Sbjct:  468 ALNWARRHKIALGIARGLAYLHTGQEVPIIHGNIRSKNVLVDDFFFARLTEFGLDKIMVQAVADEIVSQAKSDGYKAPELHKMKKCNPRSDVYAFGILLLEILMGKKPGKSGRNGNE 584          
BLAST of BQ623489 vs. ExPASy Swiss-Prot
Match: Y5659_ARATH (Probable inactive receptor kinase At5g16590 OS=Arabidopsis thaliana GN=At5g16590 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.803e-16
Identity = 58/179 (32.40%), Postives = 89/179 (49.72%), Query Frame = 2
Query:    5 LDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDFCEAIVGDFGLAKLLDHSDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGMRALEFGKSINQKGAML-EWXXXXXXXXXXXXXXDREL-----GSNYDRIEVGEILQVALLCTQYLPVHRPKCPK 523
            L+W TR  IA+GAAR + YLH + D    H ++K++N+LL +  EA V D+ LA ++       T+      G+ APE     + S+K DV+ FG+L+LEL+TG       + ++++G  L  W              D EL      SN + I    +L + + CT   P  RP  P+
Sbjct:  438 LNWETRANIALGAARAISYLHSR-DATTSHGNIKSSNILLSESFEAKVSDYCLAPMISP-----TSTPNRIDGYRAPEVTDARKISQKADVYSFGVLILELLTGKSPTH--QQLHEEGVDLPRWVSSITEQQSPSDVFDPELTRYQSDSNENMI---RLLNIGISCTTQYPDSRPTMPE 605          
BLAST of BQ623489 vs. ExPASy Swiss-Prot
Match: PUB51_ARATH (U-box domain-containing protein 51 OS=Arabidopsis thaliana GN=PUB51 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 6.272e-16
Identity = 47/121 (38.84%), Postives = 69/121 (57.02%), Query Frame = 2
Query:    5 LDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDFCEAIVGDFGLAKLLDHSDSHVTTAVR-----GTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGMRALEFGKSINQ 352
            L W  R RIA   A  L +LH      I+HRD+K AN+LLD    + +GD GL+K+++   SH +T        GT  +I PEY  TG  + ++D++ FGI+LL+L+T   A+    SI +
Sbjct:  526 LRWFERFRIAWEIASALYFLHTNEPRPIVHRDLKPANILLDRNNVSKIGDVGLSKMVNLDPSHASTVFNETGPVGTFFYIDPEYQRTGVVTPESDIYAFGIILLQLVTARSAMGLAHSIEK 646          
The following BLAST results are available for this feature:
BLAST of BQ623489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 284
Match NameE-valueIdentityDescription
IRAK1_BOVIN3.326e-1740.52Interleukin-1 receptor-associated kinase 1 OS=Bos ... [more]
EFR_ARATH3.326e-1747.12LRR receptor-like serine/threonine-protein kinase ... [more]
IMK3_ARATH5.673e-1730.81Probable leucine-rich repeat receptor-like protein... [more]
IRAK1_MOUSE9.677e-1737.93Interleukin-1 receptor-associated kinase 1 OS=Mus ... [more]
IRAK1_HUMAN9.677e-1738.46Interleukin-1 receptor-associated kinase 1 OS=Homo... [more]
PUB53_ARATH1.651e-1632.39Putative U-box domain-containing protein 53 OS=Ara... [more]
PUB33_ARATH2.156e-1640.00U-box domain-containing protein 33 OS=Arabidopsis ... [more]
TMKL1_ARATH3.677e-1637.61Putative kinase-like protein TMKL1 OS=Arabidopsis ... [more]
Y5659_ARATH4.803e-1632.40Probable inactive receptor kinase At5g16590 OS=Ara... [more]
PUB51_ARATH6.272e-1638.84U-box domain-containing protein 51 OS=Arabidopsis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00580 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00580 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623489 ID=BQ623489; Name=BQ623489; organism=Citrus sinensis; type=EST; length=525bp
GGCATTAGATTGGAACACTAGGAAGAGGATAGCAATTGGAGCTGCAAGGG
GTCTGTTATACCTACATGAGCAATGTGATCCAAAGATAATCCACAGAGAT
GTGAAGGCTGCTAATGTGCTTCTGGATGACTTCTGTGAGGCTATAGTTGG
TGACTTTGGCCTTGCAAAGCTTCTTGATCACTCCGACTCTCATGTGACTA
CTGCTGTCCGCGGTACTGTTGGTCATATAGCGCCTGAGTATCTCTCCACT
GGCCAGTCATCTGAGAAAACTGACGTGTTTGGATTTGGCATTCTCTTGTT
GGAGCTCATTACTGGAATGAGAGCTCTTGAGTTTGGCAAGTCTATTAATC
AGAAAGGAGCCATGCTTGAGTGGGTGAAGAAAATTCAGCAGGAAAAGAAA
GTAGAAGTGTTGGTGGACCGAGAGCTTGGAAGCAACTATGACCGGATTGA
GGTTGGAGAGATTCTTCAAGTGGCTTTGCTATGCACTCAATACCTTCCAG
TCCACCGCCCCAAATGTCCGAAGTG
back to top