BQ623489

Overview
NameBQ623489
Unique NameBQ623489
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length525
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623489 vs. ExPASy Swiss-Prot
Match: M3K12_HUMAN (Mitogen-activated protein kinase kinase kinase 12 OS=Homo sapiens GN=MAP3K12 PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 6.075e-11
Identity = 41/104 (39.42%), Postives = 59/104 (56.73%), Query Frame = 2
Query:    5 LDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDFCEAIVGDFGLAKLLDHSDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITG 316
            +DW+      +G A G+ YLH     KIIHRD+K+ N+L+       + DFG +K L  SD     +  GTV  +APE +     SEK D++ FG++L EL+TG
Sbjct:  214 VDWS------MGIAGGMNYLHLH---KIIHRDLKSPNMLITYDDVVKISDFGTSKEL--SDKSTKMSFAGTVAWMAPEVIRNEPVSEKVDIWSFGVVLWELLTG 306          
BLAST of BQ623489 vs. ExPASy Swiss-Prot
Match: Y4312_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g31250 OS=Arabidopsis thaliana GN=At4g31250 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.935e-11
Identity = 46/168 (27.38%), Postives = 83/168 (49.40%), Query Frame = 2
Query:    5 LDWNTRKRIAIGAARGLLYLHEQC-DPKIIHRDVKAANVLLDDFCEAIVGDFGLAKLLDHSDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITG---MRALEFGKSINQKGAMLEWXXXXXXXXXXXXXXDRELGSNYD-RIEVGEILQVALLCTQY 493
            LDW  R +I  G  RGL YL+    D  + H  +K++NVLLD   E ++ D+ L  +++   S      +  V + APE+    ++S ++DV+  GIL+LE++TG      L  GK  + +  +  W              D+E+ +  +   ++ ++L++ L C  +
Sbjct:  462 LDWPIRLKIVRGVTRGLAYLYRVFPDLNLPHGHLKSSNVLLDPNFEPLLTDYALVPVVNRDQSQ-----QFMVAYKAPEFTQQDRTSRRSDVWSLGILILEILTGKFPANYLRQGKGADDE--LAAWVESVARTEWTADVFDKEMKAGKEHEAQMLKLLKIGLRCCDW 622          
BLAST of BQ623489 vs. ExPASy Swiss-Prot
Match: WNK9_ORYSJ (Probable serine/threonine-protein kinase WNK9 OS=Oryza sativa subsp. japonica GN=WNK9 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.935e-11
Identity = 39/98 (39.80%), Postives = 59/98 (60.20%), Query Frame = 2
Query:   23 KRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLD-DFCEAIVGDFGLAKLLDHSDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELIT 313
            KR AI    GL YLH Q  P IIHRD+K  N+ ++ +  +  +GDFGLA  +         +++GT+  +APE L TG  +E  D++ FG+ +LE++T
Sbjct:  137 KRWAIQILTGLEYLHSQ-KPAIIHRDLKCDNIFINGNHGKVKIGDFGLATFMQQQKK----SIKGTLEFMAPELL-TGHYNELVDIYSFGMCMLEMVT 228          
BLAST of BQ623489 vs. ExPASy Swiss-Prot
Match: RIPK3_RAT (Receptor-interacting serine/threonine-protein kinase 3 OS=Rattus norvegicus GN=Ripk3 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 7.935e-11
Identity = 42/122 (34.43%), Postives = 68/122 (55.74%), Query Frame = 2
Query:   11 WNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDFCEAIVGDFGLAKLLDHSDSHVTTAVR---GTVGHIAPEYL-STGQSSEKTDVFGFGILLLELITGMRALEFGKSINQKGAM 364
            W    R+      G+ YLH   +P ++HRD+K +NVLLD    A + DFGL+     S S   +  R   GT+ ++APE L + G++S+ +DV+ FG+L+  ++ G  A    K+   +GA+
Sbjct:  115 WPLLCRLLEEVVLGMCYLHS-LNPSLLHRDLKPSNVLLDLELHAKLADFGLSTFQGGSQSGSGSGSRDSGGTLAYLAPELLDNDGKASKASDVYSFGVLVWTVLAGREAEVVDKTSLIRGAV 235          
The following BLAST results are available for this feature:
BLAST of BQ623489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 284
Match NameE-valueIdentityDescription
M3K12_HUMAN6.075e-1139.42Mitogen-activated protein kinase kinase kinase 12 ... [more]
Y4312_ARATH7.935e-1127.38Probable LRR receptor-like serine/threonine-protei... [more]
WNK9_ORYSJ7.935e-1139.80Probable serine/threonine-protein kinase WNK9 OS=O... [more]
RIPK3_RAT7.935e-1134.43Receptor-interacting serine/threonine-protein kina... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00580 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00580 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623489 ID=BQ623489; Name=BQ623489; organism=Citrus sinensis; type=EST; length=525bp
GGCATTAGATTGGAACACTAGGAAGAGGATAGCAATTGGAGCTGCAAGGG
GTCTGTTATACCTACATGAGCAATGTGATCCAAAGATAATCCACAGAGAT
GTGAAGGCTGCTAATGTGCTTCTGGATGACTTCTGTGAGGCTATAGTTGG
TGACTTTGGCCTTGCAAAGCTTCTTGATCACTCCGACTCTCATGTGACTA
CTGCTGTCCGCGGTACTGTTGGTCATATAGCGCCTGAGTATCTCTCCACT
GGCCAGTCATCTGAGAAAACTGACGTGTTTGGATTTGGCATTCTCTTGTT
GGAGCTCATTACTGGAATGAGAGCTCTTGAGTTTGGCAAGTCTATTAATC
AGAAAGGAGCCATGCTTGAGTGGGTGAAGAAAATTCAGCAGGAAAAGAAA
GTAGAAGTGTTGGTGGACCGAGAGCTTGGAAGCAACTATGACCGGATTGA
GGTTGGAGAGATTCTTCAAGTGGCTTTGCTATGCACTCAATACCTTCCAG
TCCACCGCCCCAAATGTCCGAAGTG
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