BQ623491

Overview
NameBQ623491
Unique NameBQ623491
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length576
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1260 contig Csv1_Contig1260:573..1147. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623491 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.862e-16
Identity = 70/198 (35.35%), Postives = 92/198 (46.46%), Query Frame = 3
Query:   51 GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHSRWAMLGALGCVFPEILSKNGVKFGEA--VWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR-----------------IXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFS 569
            G DRP +    S+Q+ SYL G  PGDYG+D  GLS DPE    F + R L   EVI+ R+AMLGA+G + PE L K G+   E    WF+ G  I   G  +Y  +           ++  ++ LMGF E  R                 +                 F+PLG   D     ELK+KE+KNGRLAM +
Sbjct:   52 GVDRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLA 237          
BLAST of BQ623491 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.465e-15
Identity = 65/187 (34.76%), Postives = 87/187 (46.52%), Query Frame = 3
Query:   84 SEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPEILSKNGVKFGEA--VWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR-----------------IXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFS 569
            S+Q+ SYL G  PGD+G+D  GLS DPE    F + + L   EVI+ R+AMLGA G + PEIL K G+   E    WF+ G  I   G  +Y  +           ++  ++ LMGF E  R                 +                 F+PLG   D     ELK+KE+KNGRLAM +
Sbjct:   59 SKQSLSYLDGRLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLA 235          
BLAST of BQ623491 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.487e-14
Identity = 44/74 (59.46%), Postives = 48/74 (64.86%), Query Frame = 3
Query:  351 LIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA---FDPLGLADDPDQFAELKVKELKNGRLAM 563
            LIHA+S+LAI A QV+LMG VEGYR                     FDPLGLADDPD F ELKVKE+KNGRLAM
Sbjct:    5 LIHAKSLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAM 78          
BLAST of BQ623491 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.351e-12
Identity = 49/158 (31.01%), Postives = 70/158 (44.30%), Query Frame = 3
Query:   90 QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAM 563
            + P+ LTGE+P D G+D   L+ADP+ +A+ R  EV H R AML  +GC+ PE+L       G+  WF+AG  +                    L +    + +    E +R                  FDPL L  D  + A     E+KNGRLA+
Sbjct:  195 EPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAGDSVDG------------------LKLGFITMAIAAPTEYWRGQGGFNWQKGELDRSYPGFDPLNLTTDYTRAA-----EVKNGRLAL 322          
BLAST of BQ623491 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.305e-12
Identity = 55/160 (34.38%), Postives = 73/160 (45.62%), Query Frame = 3
Query:   93 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAG-AQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFS 569
            +P YLTG   GD G+D  GL+ DPE      + E+++ RWAMLG  G + PE+ +K G+      W+ AG  Q F+     ++    L H   I   W   +   G V    I                 F+PL  A  P Q  E K KEL NGRLAM +
Sbjct:   63 SPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI-INVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPKGEVGYPGGIFNPLNFA--PTQ--EAKEKELANGRLAMLA 215          
BLAST of BQ623491 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.144e-11
Identity = 60/211 (28.44%), Postives = 80/211 (37.91%), Query Frame = 3
Query:   27 SAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR---------------------IXXXXXXXXXXXXXXXXAFDPLGLA---------DDPDQFAELKVKELKNGRLAMFS 569
            +AP+  W     P   G  +   P +L G  PGD+G+D  GL  DP      RE E+IH RWAML  LG          G  +    WF+AGA            +P  +   S   +   Q++LMG+VE  R                                       FDPL LA          D D+   LK+ E+K+ RLAM +
Sbjct:   54 AAPKKSWI----PAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFV-------GQAWTGIPWFEAGA------------DPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLA 241          
BLAST of BQ623491 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.952e-11
Identity = 56/188 (29.79%), Postives = 71/188 (37.77%), Query Frame = 3
Query:   96 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR---------------------IXXXXXXXXXXXXXXXXAFDPLGLA---------DDPDQFAELKVKELKNGRLAMFS 569
            P +L G  PGDYG+D  GL  DP      RE E+IH RWAM   LG          G  +    WF+AGA            +P  I   S   +   Q++LMG+VE  R                                       FDPL LA          D ++   LKV E+K+ RLAM +
Sbjct:   68 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLA 236          
BLAST of BQ623491 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.549e-11
Identity = 64/212 (30.19%), Postives = 87/212 (41.04%), Query Frame = 3
Query:   57 DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAM 563
            DRP +      ++P YL G   GDYG+D  GL    E             AKN                                RE E+IH RWAML  LG +  E L+  GV      W  AG     +G   YLG P      +++ I   +V+++G++E  R                  FDPLGLA DP + A+L++ E+K+ RLAM
Sbjct:   51 DRPLWFP--GAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLT--GV-----TWQDAGKVELVDGS-SYLGQPLPFSISTLIWI---EVLVIGYIEFQR--NAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAM 247          
The following BLAST results are available for this feature:
BLAST of BQ623491 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
CB23_PEA5.862e-1635.35Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB13_SOLLC8.465e-1534.76Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB21_EUGGR5.487e-1459.46Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
LH18_EUGGR1.351e-1231.01Light-harvesting complex I LH38 proteins (Fragment... [more]
CB24_ARATH2.305e-1234.38Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB4_SPIOL1.144e-1128.44Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB4A_SOLLC1.952e-1129.79Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB4B_ARATH2.549e-1130.19Chlorophyll a-b binding protein CP29.2, chloroplas... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00582 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00582 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623491 ID=BQ623491; Name=BQ623491; organism=Citrus sinensis; type=EST; length=576bp
GTATCACCATGAGGAGGACTGTCAAATCCGCTCCCCAGAGCATCTGGTAC
GGCCCAGACCGCCCAAAGTACTTGGGACCATTCTCTGAGCAAACACCATC
ATACTTGACTGGTGAGTTCCCTGGTGACTATGGCTGGGATACCGCTGGTT
TATCAGCAGACCCCGAGACATTTGCTAAGAACCGTGAGCTAGAGGTGATC
CACAGCAGATGGGCAATGCTTGGAGCTCTTGGCTGCGTCTTCCCTGAAAT
CCTCTCCAAGAATGGAGTGAAGTTCGGCGAAGCAGTTTGGTTCAAGGCTG
GCGCTCAAATATTCTCTGAAGGTGGCCTTGACTATCTTGGCAACCCCAAC
CTCATTCATGCTCAGAGCATTTTGGCTATCTGGGCCTGCCAGGTTGTGCT
TATGGGTTTTGTTGAAGGATACAGAATTGGTGGCGGTCCTCTTGGTGAAG
GACTTGACCCACTTTACCCTGGTGGTGCTTTTGACCCACTTGGTTTGGCT
GATGACCCCGATCAATTTGCTGAGTTGAAGGTTAAGGAGCTCAAGAATGG
CCGTCTGGCTATGTTCTCATGTTGGA
back to top