BQ623494

Overview
NameBQ623494
Unique NameBQ623494
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9128 contig Csv1_Contig9128:544..1220. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623494 vs. ExPASy Swiss-Prot
Match: VATD_CAEBR (V-type proton ATPase subunit D OS=Caenorhabditis briggsae GN=vha-14 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.832e-34
Identity = 48/98 (48.98%), Postives = 68/98 (69.39%), Query Frame = 1
Query:  310 GEVMKDSSFALIEAKYVAGENIKHIVLENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKNDLTGLARGGQQVQQCRAAYVKAIELLVELASLQLRF 603
            GEVMK+++F+L EAK+ AG+   H V++NV  A  +VR ++EN+ GV +P F+ + DG    DLTGL +GG  + + +  Y KAIELLVELA+LQ  F
Sbjct:   62 GEVMKEAAFSLAEAKFTAGD-FSHTVIQNVSQAQYRVRMKKENVVGVLLPVFDAYQDGPDAYDLTGLGKGGANIARLKKNYNKAIELLVELATLQTCF 158          

HSP 2 Score: 57.3806 bits (137), Expect = 4.832e-34
Identity = 29/54 (53.70%), Postives = 38/54 (70.37%), Query Frame = 3
Query:  150 RLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMG 311
            R+ V P+     +MK+RL GA +GH+LLKKK+DAL ++FR ILK IV  K  MG
Sbjct:    9 RIAVFPSRMAQTLMKTRLKGAQKGHSLLKKKADALNLRFRDILKKIVENKVLMG 62          

HSP 3 Score: 31.5722 bits (70), Expect = 4.832e-34
Identity = 14/17 (82.35%), Postives = 15/17 (88.24%), Query Frame = 3
Query:  594 TSFLTLDEAIKTTNRRV 644
            T F+TLDEAIK TNRRV
Sbjct:  156 TCFITLDEAIKVTNRRV 172          
BLAST of BQ623494 vs. ExPASy Swiss-Prot
Match: VATD_CAEEL (V-type proton ATPase subunit D OS=Caenorhabditis elegans GN=vha-14 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.378e-33
Identity = 48/98 (48.98%), Postives = 68/98 (69.39%), Query Frame = 1
Query:  310 GEVMKDSSFALIEAKYVAGENIKHIVLENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKNDLTGLARGGQQVQQCRAAYVKAIELLVELASLQLRF 603
            GEVMK+++F+L EAK+ AG+   H V++NV  A  +VR ++EN+ GV +P F+ + DG    DLTGL +GG  + + +  Y KAIELLVELA+LQ  F
Sbjct:   61 GEVMKEAAFSLAEAKFTAGD-FSHTVIQNVSQAQYRVRMKKENVVGVFLPVFDAYQDGPDAYDLTGLGKGGANIARLKKNYNKAIELLVELATLQTCF 157          

HSP 2 Score: 56.225 bits (134), Expect = 1.378e-33
Identity = 28/54 (51.85%), Postives = 38/54 (70.37%), Query Frame = 3
Query:  150 RLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMG 311
            R+ V P+     +MK+RL GA +GH+LLKKK+DAL ++FR IL+ IV  K  MG
Sbjct:    8 RIAVFPSRMAQTLMKTRLKGAQKGHSLLKKKADALNLRFRDILRKIVENKVLMG 61          

HSP 3 Score: 31.5722 bits (70), Expect = 1.378e-33
Identity = 14/17 (82.35%), Postives = 15/17 (88.24%), Query Frame = 3
Query:  594 TSFLTLDEAIKTTNRRV 644
            T F+TLDEAIK TNRRV
Sbjct:  155 TCFITLDEAIKVTNRRV 171          
BLAST of BQ623494 vs. ExPASy Swiss-Prot
Match: VATD_YEAST (V-type proton ATPase subunit D OS=Saccharomyces cerevisiae GN=VMA8 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.325e-33
Identity = 51/101 (50.50%), Postives = 69/101 (68.32%), Query Frame = 1
Query:  304 RWGEVMKDSSFALIEAKYVAGENIKHIVLENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKN-DLTGLARGGQQVQQCRAAYVKAIELLVELASLQLRF 603
            + G VM+ ++F+L E  Y  GENI + V E+V  A  KVR+RQEN++GV + +FE + D E  +  LTGL RGGQQVQ+ +  Y +A+E LVELASLQ  F
Sbjct:   56 KMGRVMQTAAFSLAEVSYATGENIGYQVQESVSTARFKVRARQENVSGVYLSQFESYIDPEINDFRLTGLGRGGQQVQRAKEIYSRAVETLVELASLQTAF 156          

HSP 2 Score: 57.3806 bits (137), Expect = 2.325e-33
Identity = 29/55 (52.73%), Postives = 39/55 (70.91%), Query Frame = 3
Query:  150 RLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGR 314
            R  V PT   LG+MK++L GA +G++LLK+KS+ALT +FR I K I   K+ MGR
Sbjct:    5 REQVFPTRMTLGLMKTKLKGANQGYSLLKRKSEALTKRFRDITKRIDDAKQKMGR 59          

HSP 3 Score: 28.4906 bits (62), Expect = 2.325e-33
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 3
Query:  594 TSFLTLDEAIKTTNRRV 644
            T+F+ LDE IK TNRRV
Sbjct:  154 TAFIILDEVIKVTNRRV 170          
BLAST of BQ623494 vs. ExPASy Swiss-Prot
Match: VATD_DICDI (V-type proton ATPase subunit D OS=Dictyostelium discoideum GN=atp6v1d PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.140e-33
Identity = 48/100 (48.00%), Postives = 69/100 (69.00%), Query Frame = 1
Query:  310 GEVMKDSSFALIEAKYVAGENIKHIVLENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKN--DLTGLARGGQQVQQCRAAYVKAIELLVELASLQLRF 603
            G  M+D+SF+L  AKY AGE   + V+ENV N +I V+   EN+AGV +P FE  ++G   N  +LTGL++GGQQ+ + R +++KA+E L+ LASLQ  F
Sbjct:   59 GTTMRDASFSLAAAKYAAGE-FSNSVIENVSNPTIAVKMTTENVAGVHLPTFEKISEGVVSNSQELTGLSKGGQQINKSRESHIKAVEALIALASLQTAF 157          

HSP 2 Score: 68.1662 bits (165), Expect = 3.140e-33
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 3
Query:  135 MAQNQRLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMG 311
            M+   RL + PT   L VMK++L GA  GH+LLKKKSDALT++FR+IL NIV  K+ MG
Sbjct:    1 MSGKNRLNIFPTRMALTVMKTKLKGAVTGHSLLKKKSDALTIRFRRILANIVENKQLMG 59          
BLAST of BQ623494 vs. ExPASy Swiss-Prot
Match: VATD_CANAL (V-type proton ATPase subunit D OS=Candida albicans GN=VMA8 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.446e-32
Identity = 50/102 (49.02%), Postives = 70/102 (68.63%), Query Frame = 1
Query:  304 RWGEVMKDSSFALIEAKYVAGENIKHIVLENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKND--LTGLARGGQQVQQCRAAYVKAIELLVELASLQLRF 603
            + G VM+ ++F+L E +Y  G+NI + V E+VQ A   V+++QEN++GV +P F+   + E  ND  LT LARGGQQVQ+ +  Y KA+E LVELASLQ  F
Sbjct:   58 KMGRVMQTAAFSLAEVQYATGDNISYQVQESVQKARFTVKAKQENVSGVFLPTFDSHIN-EDVNDFKLTALARGGQQVQKAKLIYSKAVETLVELASLQTAF 158          

HSP 2 Score: 59.3066 bits (142), Expect = 2.446e-32
Identity = 31/55 (56.36%), Postives = 38/55 (69.09%), Query Frame = 3
Query:  150 RLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGR 314
            R  V PT   LGVMKS+L GA +GH+LLK+KS+ALT +FR I + I   K  MGR
Sbjct:    7 REQVFPTRMTLGVMKSKLKGAQQGHSLLKRKSEALTKRFRDITQRIDDAKRKMGR 61          

HSP 3 Score: 28.1054 bits (61), Expect = 2.446e-32
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 3
Query:  594 TSFLTLDEAIKTTNRRV 644
            T+F+ LDE IK TNRRV
Sbjct:  156 TAFIILDEVIKITNRRV 172          
BLAST of BQ623494 vs. ExPASy Swiss-Prot
Match: VATD_NEUCR (V-type proton ATPase subunit D OS=Neurospora crassa GN=vma-8 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 5.364e-32
Identity = 46/101 (45.54%), Postives = 68/101 (67.33%), Query Frame = 1
Query:  304 RWGEVMKDSSFALIEAKYVAGENIKHIVLENVQNASIKVRSRQENIAGVKIPKFE-YFTDGETKNDLTGLARGGQQVQQCRAAYVKAIELLVELASLQLRF 603
            + G VM+ +S +L E  Y  G NI + + E+ ++A  ++R++QEN++GV +P FE Y  +G     +TGL +GGQQVQ+CR  Y +A+E LVELASLQ  F
Sbjct:   58 KMGRVMQIASLSLAEVTYAVGGNIGYQIQESAKSARFRIRAKQENVSGVLLPAFEAYQAEGNDDFAMTGLGKGGQQVQRCRETYARAVEALVELASLQTAF 158          

HSP 2 Score: 58.5362 bits (140), Expect = 5.364e-32
Identity = 29/55 (52.73%), Postives = 38/55 (69.09%), Query Frame = 3
Query:  150 RLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGR 314
            R  V PT   LG+MK++L GA  GH+LLK+KS+ALT +FR+I + I   K  MGR
Sbjct:    7 REAVFPTRQSLGIMKAKLKGAETGHSLLKRKSEALTKRFREITRRIDEAKRKMGR 61          

HSP 3 Score: 26.1794 bits (56), Expect = 5.364e-32
Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = 3
Query:  594 TSFLTLDEAIKTTNRRV 644
            T+F+ LDE IK  NRRV
Sbjct:  156 TAFVILDEVIKVVNRRV 172          
BLAST of BQ623494 vs. ExPASy Swiss-Prot
Match: VATD_SCHPO (V-type proton ATPase subunit D OS=Schizosaccharomyces pombe GN=vma8 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.527e-28
Identity = 43/101 (42.57%), Postives = 65/101 (64.36%), Query Frame = 1
Query:  304 RWGEVMKDSSFALIEAKYVAGENIKHIVLENVQNASIKVRSRQENIAGVKIPKFEYFTDGETKN-DLTGLARGGQQVQQCRAAYVKAIELLVELASLQLRF 603
            + G VM+ ++F++ E  +  G NI   + ++V+   ++VRS+QENI+GV +P FE   D    +  LTGL +GGQQ+Q+ R  Y KA+E LV+LAS Q  F
Sbjct:   57 KMGRVMQIAAFSMAEVGFAMGNNINFEIQQSVKQPRLRVRSKQENISGVFLPTFEMNLDESIDDFQLTGLGKGGQQIQKARQVYEKAVETLVQLASYQSAF 157          

HSP 2 Score: 61.2326 bits (147), Expect = 4.527e-28
Identity = 32/60 (53.33%), Postives = 40/60 (66.67%), Query Frame = 3
Query:  135 MAQNQRLTVVPTVTMLGVMKSRLVGATRGHALLKKKSDALTVQFRQILKNIVTTKESMGR 314
            MA  QR  V PT   L  MK+RL GA  GH+LLK+KS+AL  +FR+I+ NI   K+ MGR
Sbjct:    1 MASKQRENVFPTRMTLTTMKTRLKGAQTGHSLLKRKSEALKKRFREIVVNIEQAKQKMGR 60          
The following BLAST results are available for this feature:
BLAST of BQ623494 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
VATD_CAEBR4.832e-3448.98V-type proton ATPase subunit D OS=Caenorhabditis b... [more]
VATD_CAEEL1.378e-3348.98V-type proton ATPase subunit D OS=Caenorhabditis e... [more]
VATD_YEAST2.325e-3350.50V-type proton ATPase subunit D OS=Saccharomyces ce... [more]
VATD_DICDI3.140e-3348.00V-type proton ATPase subunit D OS=Dictyostelium di... [more]
VATD_CANAL2.446e-3249.02V-type proton ATPase subunit D OS=Candida albicans... [more]
VATD_NEUCR5.364e-3245.54V-type proton ATPase subunit D OS=Neurospora crass... [more]
VATD_SCHPO4.527e-2842.57V-type proton ATPase subunit D OS=Schizosaccharomy... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00585 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00585 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623494 ID=BQ623494; Name=BQ623494; organism=Citrus sinensis; type=EST; length=677bp
TTTCTCGCTAATTTTCTCTGGAGCCAAATTCGATCTTTCACTTAAACCGG
AGTTAGGGTTCCATTTGATCTCATCGGATCGGCCTTTCGCGGAATCTTAA
ACTCCCTAATATTTGGATCAGATAATTTGGAAAGATGGCGCAAAACCAGC
GGTTGACTGTGGTTCCCACAGTGACAATGCTAGGGGTTATGAAAAGTAGG
CTTGTTGGTGCTACAAGAGGGCATGCCCTTTTGAAGAAGAAGAGTGATGC
TTTAACTGTTCAGTTTCGTCAGATCCTTAAGAATATCGTGACTACGAAGG
AATCGATGGGGAGAAGTTATGAAAGATTCTTCCTTTGCCCTGATTGAGGC
CAAGTATGTTGCTGGCGAAAACATCAAGCACATTGTTCTTGAGAATGTGC
AAAATGCTTCTATTAAAGTTCGATCCCGTCAAGAGAATATTGCAGGTGTT
AAGATTCCAAAGTTTGAGTACTTCACTGATGGCGAGACCAAGAATGATCT
TACAGGATTGGCTAGAGGTGGGCAACAAGTGCAACAGTGTCGTGCTGCTT
ATGTGAAAGCCATTGAGCTTCTTGTCGAGCTTGCTTCTCTTCAACTTCGT
TTTTGACGCTGGATGAGGCGATTAAGACCACAAACCGCAGGGTTATGCTT
TGGAGAATGTAGTCAGCCTAGATTGGA
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