BQ623496

Overview
NameBQ623496
Unique NameBQ623496
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9137 contig Csv1_Contig9137:67..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of BQ623496 vs. ExPASy Swiss-Prot
Match: C3H8_ORYSJ (Zinc finger CCCH domain-containing protein 8 OS=Oryza sativa subsp. japonica GN=Os01g0616400 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 5.476e-16
Identity = 33/83 (39.76%), Postives = 54/83 (65.06%), Query Frame = 2 
Query:  233 FPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKG-------LPLRPGQNVCSYYSRYGICKFGPACKYDHP 460
            +PE+ G+P+C +F++TG CK+ S CK++HPK ++        +DK        LP+RP + +CS+Y++ G CKF   CK++HP
Sbjct:  153 YPEQEGEPDCPFFMKTGKCKFGSKCKFNHPKEKVNALASGNTNDKHLIADSSILPVRPSEPLCSFYAKTGKCKFRAMCKFNHP 235

HSP 2 Score: 83.9593 bits (206), Expect = 7.151e-16
Identity = 40/106 (37.74%), Postives = 57/106 (53.77%), Query Frame = 2 
Query:  206 HQPQMLVGE----FPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCT---------LSDKGLPLRPGQNVCSYYSRYGICKFGPACKYDHPIHPDASAE 484
            H   M VG     +P+RPG   C ++++TG CK+   CK+HHP +R    P            L+  GLP R    VC++Y + G+CKFG  CK+DHP   +A A+
Sbjct:  351 HAAHMPVGPGPVTYPQRPGATVCDFYMKTGFCKFADRCKFHHPIDRSAPDPSANWEPAEESVQLTLAGLPRREDAVVCAFYMKTGVCKFGMQCKFDHPPPQEAIAK 456
The following BLAST results are available for this feature:
BLAST of BQ623496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
C3H8_ORYSJ5.476e-1639.76Zinc finger CCCH domain-containing protein 8 OS=Or... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00587 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00587 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623496 ID=BQ623496; Name=BQ623496; organism=Citrus sinensis; type=EST; length=631bp
TATAGGATCCTGGTCATCACCTAGGGCTTTAAATGAACCTGCTCCCTTTG
TGCCAATGATGTATTCACCAACTCCAGGGGTTCCTTCTCAAAATTCAGAA
TGGAATGGGTATCAGTCTCCTCTATATCCACAAGAAAGGAGCGTGCAGTC
AGCCCCCACGTATGTCATAAACAACAACCCATTGGTAGATAATGTCCAGA
TAATTCATCAGCCGCAGATGCTAGTTGGTGAGTTCCCAGAACGACCTGGC
CAGCCTGAGTGCAGTTACTTCCTAAGAACGGGAGACTGTAAGTATAAGTC
TAATTGCAAATATCATCATCCAAAAAATCGAATCCCTAAGTCACCACCAT
GCACTCTCAGCGACAAGGGTCTGCCACTGCGGCCTGGTCAAAACGTCTGT
TCATATTATAGCCGCTATGGCATTTGCAAGTTTGGGCCGGCTTGTAAATA
TGATCATCCGATACATCCAGATGCTTCAGCTGAGTATGGGCTAGATCCGC
CTCCATCATTTGGCGACTCTACAACTAGGCAAGAGACTGGAATGGCTGGA
ACTGGAAACGGAAATGGGGGTGACAAGAACATTTAGCAGCCTGTGTAATT
TTTTTTTGCATCGAGGGCTCTCTAGATTTTA
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