BQ623498

Overview
NameBQ623498
Unique NameBQ623498
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length576
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of BQ623498 vs. ExPASy Swiss-Prot
Match: RS17E_META3 (30S ribosomal protein S17e OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps17e PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.760e-12
Identity = 29/61 (47.54%), Postives = 46/61 (75.41%), Query Frame = 2 
Query:    2 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRI 184
            MGR+R   +K++   ++E+Y  R+T DF TNKK+++EVA I +KRLRN++AG+ T  MK++
Sbjct:    1 MGRIRQTFIKRAGEDLVEKYEDRLTTDFETNKKVIDEVAEIATKRLRNRVAGYVTKKMKKV 61
The following BLAST results are available for this feature:
BLAST of BQ623498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RS17E_META38.760e-1247.5430S ribosomal protein S17e OS=Methanococcus aeolic... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00589 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00589 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623498 ID=BQ623498; Name=BQ623498; organism=Citrus sinensis; type=EST; length=576bp
AATGGGTCGTGTTCGTACCAAGACCGTGAAGAAGTCCTCTCGCCAGGTGA
TTGAGAGGTACTACTCAAGAATGACACTGGACTTCCATACCAACAAGAAA
ATTTTGGAGGAGGTTGCTATCATCCCCTCGAAGAGGCTGCGTAACAAAAT
TGCTGGGTTCTCAACCCATTTGATGAAGAGGATTCAGAAGGGTCCAGTTC
GTGGAATCTCCCTTAAATTGCAGGAAGAGGAGCGCGAACGCCGCATGGAC
TTTGTGCCTGATGAGTCAGCTATTAAGACTGATGAAATTAAGGTTGACAA
GGAAACCTTGGATATGCTTGCTGCTCTTGGCATGTCCGACATTTCTGGGC
TTGTTGAAGTTGAGCCACAGAGCATGATTACTCCTCCAGTTTTTGGTCGG
GGGTGGTGGCAGGAGGTACTGAGTTAATTGAGGCTTTGTGGCTCAATCAA
GAATGAGAAGTTTAGGTTCTTATTAATCAGTACTTCTTGTGTTTGTTATG
AATGCTTTTGTGACTAGTTTTCTTTACTATTTTAAGAAGGGTGTTTAGTT
AAAACTTGAAAAAAAAAAAAAAAAAA
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