BQ623499

Overview
NameBQ623499
Unique NameBQ623499
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length594
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623499 vs. ExPASy Swiss-Prot
Match: UBCX_PICPA (Ubiquitin-conjugating enzyme E2-24 kDa OS=Pichia pastoris GN=PEX4 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.993e-13
Identity = 49/158 (31.01%), Postives = 74/158 (46.84%), Query Frame = 2
Query:    2 AEDMFH-WQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRT----------------------------------KVFHPNINSN-GSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK-SDKAKYESTARSWTQKYAM 364
            +ED F+ W A + GP+D+ Y    + + I  P +YP +PPK  F                                    ++ HPNI  N G ICLDIL+ +W+PA T+S  L +I  LL DP P  PL  ++A++ K +D   Y S    +  +Y++
Sbjct:   39 SEDNFYKWTAKLKGPTDTGYQDAFWELQIDIPSNYPTQPPKFTFIVSDDIPRNRRQRQTNQIQDDDEFEGAEKEVLRHCYRMPHPNIAFNTGEICLDILQAKWTPAWTLSSALTAIVLLLNDPEPLSPLDIDMANLMKINDLKAYNSLIEYYVGRYSI 196          
BLAST of BQ623499 vs. ExPASy Swiss-Prot
Match: UB2FB_MOUSE (NEDD8-conjugating enzyme UBE2F-B OS=Mus musculus GN=Ube2fb PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.517e-13
Identity = 42/116 (36.21%), Postives = 57/116 (49.14%), Query Frame = 2
Query:   35 MGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 361
            + P +  Y GG F   I  P  Y   PPKV   TK++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD  N  DPL  E A  +  DK  +      + ++YA
Sbjct:   69 VSPDEGYYQGGNFQFEIEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSADGTGWAPTRTLKDVVWGLNSLFTDLLNFYDPLNIEAAEHHLQDKEDFRDKVDEYIRRYA 184          
BLAST of BQ623499 vs. ExPASy Swiss-Prot
Match: UBC16_ARATH (Probable ubiquitin carrier protein E2 16 OS=Arabidopsis thaliana GN=UBC16 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.112e-12
Identity = 33/85 (38.82%), Postives = 52/85 (61.18%), Query Frame = 2
Query:    5 EDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAF-RTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 256
            +++  W   ++G   + YA   + + + FP  YP + P+V F      HP+I SNG ICLDIL + WSPA+T+S + +SI S+L+
Sbjct:   41 DNLQRWIIEVIGAPGTLYANDTYQLQVDFPEHYPMESPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLS 125          
BLAST of BQ623499 vs. ExPASy Swiss-Prot
Match: UBC18_ARATH (Probable ubiquitin carrier protein E2 18 OS=Arabidopsis thaliana GN=UBC18 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.478e-12
Identity = 34/85 (40.00%), Postives = 51/85 (60.00%), Query Frame = 2
Query:    5 EDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKV-FHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 256
            +++  W   + G   + YA   + + + FP  YP + P+V F      HP+I SNG ICLDIL + WSPA+T+S V +SI S+L+
Sbjct:   41 DNLQKWVIEVTGAPGTLYANETYNLQVEFPQHYPMEAPQVIFVPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLS 125          
BLAST of BQ623499 vs. ExPASy Swiss-Prot
Match: UBC15_ARATH (Ubiquitin-conjugating enzyme 15 OS=Arabidopsis thaliana GN=UBC15 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.478e-12
Identity = 33/85 (38.82%), Postives = 52/85 (61.18%), Query Frame = 2
Query:    5 EDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKV-FHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 256
            +++  W   + G   + YA   + + + FP  YP + P+V F +    HP+I SNG ICLDIL + WSPA+T++ V +SI S+L+
Sbjct:   41 DNLQKWTIDVTGAPGTLYANETYQLQVEFPEHYPMEAPQVVFVSPAPSHPHIYSNGHICLDILYDSWSPAMTVNSVCISILSMLS 125          
BLAST of BQ623499 vs. ExPASy Swiss-Prot
Match: UBC17_CAEEL (Probable ubiquitin-conjugating enzyme protein 17 OS=Caenorhabditis elegans GN=ubc-17 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 5.521e-12
Identity = 37/82 (45.12%), Postives = 50/82 (60.98%), Query Frame = 2
Query:   32 IMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTK-----VFHPNINSNGSICLDIL-------KEQWSPALTISKVLLSI 241
            I GP D+PYA G+F   I FP  YPF PPK AF T       F+PN+ ++G ICL IL       +E+W+P  ++ +VL+SI
Sbjct:  449 ISGPDDTPYANGLFEFDIFFPTGYPFSPPKCAFLTTGSGNVRFNPNLYNDGKICLSILGTWEGRPEEKWNPYCSLMQVLVSI 530          
BLAST of BQ623499 vs. ExPASy Swiss-Prot
Match: UBC12_CAEEL (NEDD8-conjugating enzyme ubc-12 OS=Caenorhabditis elegans GN=ubc-12 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.521e-12
Identity = 39/113 (34.51%), Postives = 58/113 (51.33%), Query Frame = 2
Query:   41 PSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKSDKAKYESTARSWTQKY 358
            P +  Y GG F   I  PP+Y   PP V   TKV+HPNIN +GSICL IL++       W P   ++ V+  + SL  D  + +D L  + A M+  ++  +    R +  +Y
Sbjct:   67 PQEGIYRGGKFRFKITVPPEYNNVPPVVKCLTKVWHPNINEDGSICLSILRQNSLDQYGWRPTRNLTDVVHGLVSLFNDLMDFNDALNIQAAQMWSQNRESFNHRVREYISRY 179          
BLAST of BQ623499 vs. ExPASy Swiss-Prot
Match: UBC17_ARATH (Probable ubiquitin carrier protein E2 17 OS=Arabidopsis thaliana GN=UBC17 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.210e-12
Identity = 32/86 (37.21%), Postives = 52/86 (60.47%), Query Frame = 2
Query:    2 AEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKV-FHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 256
            ++++  W   + G   + YA   + + + FP  YP + P+V F+     HP+I SNG ICLD+L + WSPA+ +S + LSI S+L+
Sbjct:   40 SDNLQRWIIEVHGVPGTLYANETYQLQVEFPEHYPMEAPQVIFQHPAPLHPHIYSNGHICLDVLYDSWSPAMRLSSICLSILSMLS 125          
BLAST of BQ623499 vs. ExPASy Swiss-Prot
Match: UBE2W_DICDI (Probable ubiquitin-conjugating enzyme E2 W OS=Dictyostelium discoideum GN=ube2w PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.230e-11
Identity = 37/85 (43.53%), Postives = 48/85 (56.47%), Query Frame = 2
Query:    5 EDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAF-RTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 256
            +++  W   + G   S Y G  F +   F   YP   P+V F  T   HP+I SNG ICL IL + WSPALT+S V LSI S+L+
Sbjct:   30 DNLDKWVIAVDGTEGSIYQGEHFKLQFKFSSGYPLDSPEVIFIGTPPIHPHIYSNGHICLSILYDNWSPALTVSSVCLSILSMLS 114          
BLAST of BQ623499 vs. ExPASy Swiss-Prot
Match: UBC6_SCHPO (Ubiquitin-conjugating enzyme E2 6 OS=Schizosaccharomyces pombe GN=ubc6 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.104e-11
Identity = 32/87 (36.78%), Postives = 48/87 (55.17%), Query Frame = 2
Query:    5 EDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLT 256
            E++  W   I GP D+PY GG +  T+ FPPDYPFKPP +   T        +N  +CL   D   + W+P+  +S +L+ + S +T
Sbjct:   32 ENILEWHYIITGPPDTPYEGGQYHGTLIFPPDYPFKPPAIRMITP--SGRFQTNTRLCLSFSDFHPKSWNPSWMVSTILVGLVSFMT 116          
The following BLAST results are available for this feature:
BLAST of BQ623499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
UBCX_PICPA4.993e-1331.01Ubiquitin-conjugating enzyme E2-24 kDa OS=Pichia p... [more]
UB2FB_MOUSE8.517e-1336.21NEDD8-conjugating enzyme UBE2F-B OS=Mus musculus G... [more]
UBC16_ARATH1.112e-1238.82Probable ubiquitin carrier protein E2 16 OS=Arabid... [more]
UBC18_ARATH2.478e-1240.00Probable ubiquitin carrier protein E2 18 OS=Arabid... [more]
UBC15_ARATH2.478e-1238.82Ubiquitin-conjugating enzyme 15 OS=Arabidopsis tha... [more]
UBC17_CAEEL5.521e-1245.12Probable ubiquitin-conjugating enzyme protein 17 O... [more]
UBC12_CAEEL5.521e-1234.51NEDD8-conjugating enzyme ubc-12 OS=Caenorhabditis ... [more]
UBC17_ARATH7.210e-1237.21Probable ubiquitin carrier protein E2 17 OS=Arabid... [more]
UBE2W_DICDI1.230e-1143.53Probable ubiquitin-conjugating enzyme E2 W OS=Dict... [more]
UBC6_SCHPO6.104e-1136.78Ubiquitin-conjugating enzyme E2 6 OS=Schizosacchar... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00590 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00590 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623499 ID=BQ623499; Name=BQ623499; organism=Citrus sinensis; type=EST; length=594bp
GGCTGAAGACATGTTCCACTGGCAAGCAACAATTATGGGCCCTTCTGATA
GCCCATATGCAGGAGGTGTATTTTTAGTTACCATTCATTTTCCTCCTGAT
TATCCTTTCAAGCCCCCAAAGGTTGCTTTTAGGACCAAGGTCTTCCACCC
GAACATCAACAGCAATGGAAGCATCTGTCTTGATATCCTTAAAGAACAGT
GGAGTCCAGCGCTTACCATTTCAAAGGTCCTGCTCTCTATCTGCTCCTTG
CTTACTGATCCAAATCCCGACGACCCTCTTGTACCGGAGATTGCCCACAT
GTACAAGTCCGACAAGGCCAAATATGAATCCACGGCCAGGAGCTGGACAC
AGAAGTATGCCATGGGATGAAGGTTGTTAGGATATTGCAGAAAAAGGAGC
ATTTATTGAAATATGTTGTGTGTGTTGTCTATCTATTTTCTTTAACTTGC
TTTGGGGAGGGCAGACGTTGGTGTTTTAGAATGGTGTTGGGAGGAGTTGC
AAGGGCGGGACGTTCTTATGTTAATGGTGAATGTTTGTGTTTGAAGCTTC
TTCGATGGAACGTAGTTATGGGCCTAAAAAAACGTAACACACAA
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