BQ623499

Overview
NameBQ623499
Unique NameBQ623499
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length594
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623499 vs. ExPASy Swiss-Prot
Match: UBC13_YEAST (Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyces cerevisiae GN=UBC13 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.446e-28
Identity = 57/119 (47.90%), Postives = 81/119 (68.07%), Query Frame = 2
Query:    5 EDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 361
            +++ ++Q TI GP  SPY  G+F + ++ P DYP + PKV F TK++HPNI+  G ICLD+LK  WSPAL I  VLLSI +LL  PNP+DPL  ++A  +  ++   ++ AR WT+ YA
Sbjct:   30 DNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYA 148          
BLAST of BQ623499 vs. ExPASy Swiss-Prot
Match: UBE2T_XENLA (Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevis GN=ube2t PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.222e-28
Identity = 60/118 (50.85%), Postives = 83/118 (70.34%), Query Frame = 2
Query:   23 QATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 364
            +A I+G S SPY GG+F + I  P  YPF+PPK+ F T ++HPNI+S G ICLDIL    K  W PAL IS VL SI  L+++PNPDDPL+ +I+  +K ++A + S A+ WT+K+A+
Sbjct:   35 RAQIIGGSGSPYEGGIFNLEIIVPERYPFEPPKIRFLTPIYHPNIDSAGRICLDILKLPPKGAWRPALNISTVLTSIQLLMSEPNPDDPLMADISSEFKYNRAVFFSNAKKWTEKHAL 152          
BLAST of BQ623499 vs. ExPASy Swiss-Prot
Match: UBC2_WHEAT (Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum GN=UBC2 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.495e-28
Identity = 58/115 (50.43%), Postives = 75/115 (65.22%), Query Frame = 2
Query:   20 WQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY-----ESTARSWT 349
            W A I GP D+P+ GG F +T+ F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A MY  +K +Y     E   +SWT
Sbjct:   36 WNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSENKREYNRKVREVVEQSWT 150          
BLAST of BQ623499 vs. ExPASy Swiss-Prot
Match: UBC27_ARATH (Ubiquitin carrier protein E2 27 OS=Arabidopsis thaliana GN=UBC27 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.373e-28
Identity = 59/121 (48.76%), Postives = 81/121 (66.94%), Query Frame = 2
Query:    2 AEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 361
            ++++     TI GP  +PY GG F + I  P  YPF+PPK+ F TKV+HPNI+S +G+ICLDILK+QWSPALT+   L+SI +LL+ P P DP    +A  Y  +   + STAR WT+ +A
Sbjct:   29 SDNLTRLTGTIPGPIGTPYEGGTFQIDITMPDGYPFEPPKMQFSTKVWHPNISSQSGAICLDILKDQWSPALTLKTALVSIQALLSAPEPKDPQDAVVAEQYMKNYQVFVSTARYWTETFA 149          
BLAST of BQ623499 vs. ExPASy Swiss-Prot
Match: UBC1_ARATH (Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana GN=UBC1 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.088e-27
Identity = 57/115 (49.57%), Postives = 73/115 (63.48%), Query Frame = 2
Query:   20 WQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTAR-----SWT 349
            W A I GP D+P+ GG F +++ F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A MY   K +Y    R     SWT
Sbjct:   36 WNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSWT 150          
BLAST of BQ623499 vs. ExPASy Swiss-Prot
Match: UBC2_MEDSA (Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.652e-27
Identity = 56/115 (48.70%), Postives = 75/115 (65.22%), Query Frame = 2
Query:   20 WQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY-----ESTARSWT 349
            W A I GP D+P+ GG F +++ F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A M+  +K +Y     E   +SWT
Sbjct:   36 WNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREVVEQSWT 150          
BLAST of BQ623499 vs. ExPASy Swiss-Prot
Match: UBC13_SCHPO (Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccharomyces pombe GN=ubc13 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.652e-27
Identity = 54/120 (45.00%), Postives = 81/120 (67.50%), Query Frame = 2
Query:    5 EDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 364
            +++ +++ T+ GP  S Y GG F + +  P +YP  PP V F TK++HPN++  G ICL  LK+ WSPAL I  VLLSI +L+  PNPDDPL  ++A ++K ++ +  + AR WT+KYA+
Sbjct:   29 DNLRYFKITMEGPQQSAYEGGKFHLELFLPDEYPMMPPNVRFLTKIYHPNVDKLGRICLSTLKKDWSPALQIRTVLLSIQALMGAPNPDDPLDNDVAKIWKENEPQAIANAREWTKKYAV 148          
BLAST of BQ623499 vs. ExPASy Swiss-Prot
Match: UBC2_ARATH (Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana GN=UBC2 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.076e-27
Identity = 56/115 (48.70%), Postives = 74/115 (64.35%), Query Frame = 2
Query:   20 WQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY-----ESTARSWT 349
            W A I GP D+P+ GG F +++ F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A M+   K +Y     E   +SWT
Sbjct:   36 WNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSESKREYNRRVREVVEQSWT 150          
BLAST of BQ623499 vs. ExPASy Swiss-Prot
Match: UBCD6_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=UbcD6 PE=2 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.036e-26
Identity = 52/112 (46.43%), Postives = 74/112 (66.07%), Query Frame = 2
Query:   20 WQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQK 355
            W A I GP D+P+  G F +TI F  +YP KPP V F +KVFHPN+ ++G ICLDIL+ +WSP   +S +L SI SLL+DPNP+ P     A +YK ++ +YE   ++  ++
Sbjct:   36 WNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKVFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPNPNSPANSTAAQLYKENRREYEKRVKACVEQ 147          
BLAST of BQ623499 vs. ExPASy Swiss-Prot
Match: UBE2K_MOUSE (Ubiquitin-conjugating enzyme E2 K OS=Mus musculus GN=Ube2k PE=2 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 1.768e-26
Identity = 57/120 (47.50%), Postives = 77/120 (64.17%), Query Frame = 2
Query:    5 EDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 361
            E+    +  I GP D+PY GG + + I  P  YPF PPKV F TK++HPNI+S  G+ICLDILK+QW+ A+T+  VLLS+ +LL    PDDP    +A+ YK +   ++ TAR W   YA
Sbjct:   34 ENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 153          
The following BLAST results are available for this feature:
BLAST of BQ623499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
UBC13_YEAST1.446e-2847.90Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyce... [more]
UBE2T_XENLA3.222e-2850.85Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevi... [more]
UBC2_WHEAT5.495e-2850.43Ubiquitin-conjugating enzyme E2 2 OS=Triticum aest... [more]
UBC27_ARATH9.373e-2848.76Ubiquitin carrier protein E2 27 OS=Arabidopsis tha... [more]
UBC1_ARATH2.088e-2749.57Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis t... [more]
UBC2_MEDSA4.652e-2748.70Ubiquitin-conjugating enzyme E2 2 OS=Medicago sati... [more]
UBC13_SCHPO4.652e-2745.00Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccha... [more]
UBC2_ARATH6.076e-2748.70Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis t... [more]
UBCD6_DROME1.036e-2646.43Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBE2K_MOUSE1.768e-2647.50Ubiquitin-conjugating enzyme E2 K OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00590 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00590 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623499 ID=BQ623499; Name=BQ623499; organism=Citrus sinensis; type=EST; length=594bp
GGCTGAAGACATGTTCCACTGGCAAGCAACAATTATGGGCCCTTCTGATA
GCCCATATGCAGGAGGTGTATTTTTAGTTACCATTCATTTTCCTCCTGAT
TATCCTTTCAAGCCCCCAAAGGTTGCTTTTAGGACCAAGGTCTTCCACCC
GAACATCAACAGCAATGGAAGCATCTGTCTTGATATCCTTAAAGAACAGT
GGAGTCCAGCGCTTACCATTTCAAAGGTCCTGCTCTCTATCTGCTCCTTG
CTTACTGATCCAAATCCCGACGACCCTCTTGTACCGGAGATTGCCCACAT
GTACAAGTCCGACAAGGCCAAATATGAATCCACGGCCAGGAGCTGGACAC
AGAAGTATGCCATGGGATGAAGGTTGTTAGGATATTGCAGAAAAAGGAGC
ATTTATTGAAATATGTTGTGTGTGTTGTCTATCTATTTTCTTTAACTTGC
TTTGGGGAGGGCAGACGTTGGTGTTTTAGAATGGTGTTGGGAGGAGTTGC
AAGGGCGGGACGTTCTTATGTTAATGGTGAATGTTTGTGTTTGAAGCTTC
TTCGATGGAACGTAGTTATGGGCCTAAAAAAACGTAACACACAA
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