BQ623501

Overview
NameBQ623501
Unique NameBQ623501
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12683 contig Csv1_Contig12683:458..1149. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623501 vs. ExPASy Swiss-Prot
Match: PEL3_ARATH (Probable pectate lyase 3 OS=Arabidopsis thaliana GN=AT59 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.677e-28
Identity = 85/245 (34.69%), Postives = 128/245 (52.24%), Query Frame = 1
Query:   13 PGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLT-GKGLRLKECEHVIICNLEFE------GGKGPDVDA-IQIKPKSK----------HIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTI-HHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEKASDKEEARSGCIRAEGGF 690
            PG+LR       PLWI+F  S  I L+  L ++S KTIDGRG RV +  G GL L+   +VII N+  +      GG   D +A I ++ KS           +IWID  S+    DG+ID    ST +T+S  HF+ H + ML GA   HV D+ +++T+  + F     QR PR RY  +H+ NN   +W +YA+  +++  I SQ N + A   + A +    + +   E +S   ++EG +
Sbjct:  159 PGTLRHAVTRDGPLWIIFARSMIIKLQQELMITSDKTIDGRGARVYIMEGAGLTLQFVNNVIIHNIYVKHIVPGNGGLIRDSEAHIGLRTKSDGDGISLFGATNIWIDHVSMTRCADGMIDAIDGSTAVTISNSHFTDHQEVMLFGARDEHVIDKKMQITVAFNHFGKRLEQRMPRCRYGTIHVVNNDYTHWEMYAIGGNMNPTIISQGNRFIAPPNEEAKQITKREYTPYGEWKSWNWQSEGDY 403          
BLAST of BQ623501 vs. ExPASy Swiss-Prot
Match: PEL_ZINEL (Pectate lyase OS=Zinnia elegans PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.683e-28
Identity = 85/244 (34.84%), Postives = 123/244 (50.41%), Query Frame = 1
Query:   13 PGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKL-TGKGLRLKECEHVIICNLEF----EGGKG--------------PDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTI-HHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEKASDKEEARSGCIRAEG 684
            PG+LR      EPLWI+F+    I LR  L ++S+KTIDGRG  V +  G  + +    ++II  +      + G G               D D I I   SK IWID  SL +  DGLID    ST IT+S  + + HDK ML+G   S+  D+ ++VTI  + F +G  QR PR R+   H+ NN   +W +YA+  S    IYSQ N + A   +   +    + + + E ++   R+EG
Sbjct:  107 PGTLRYAVIQDEPLWIIFKRDMVIQLRQELVMNSHKTIDGRGVNVHIGNGPCITIHYASNIIIHGIHIHDCKQAGNGNIRNSPHHSGWWTQSDGDGISIFA-SKDIWIDHNSLSNCHDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTIYSQGNRFLAPNTRFDKEVTKHENAPESEWKNWNWRSEG 349          
BLAST of BQ623501 vs. ExPASy Swiss-Prot
Match: PEL59_SOLLC (Probable pectate lyase P59 OS=Solanum lycopersicum GN=LAT59 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.683e-28
Identity = 84/218 (38.53%), Postives = 115/218 (52.75%), Query Frame = 1
Query:    4 DDGPGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLT-GKGLRLKECEHVIICNL------EFEGGKGPD-VDAIQIKPKS----------KHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTR--QRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEA 597
            D  PG+LR     KEPLWI+F+    I L   + + S KTID RG  V +T G G+ L+  ++VII  L      E  GG   D VD I I+ KS           +IWID  S++   DGLID    ST IT+S  HF+ H++ ML GA  S   D+ +++T+    F G R  QR PR R+  +H+ NN   +W +YA+  S+   I  Q N + A
Sbjct:  150 DPKPGTLRHAVIQKEPLWIIFKRGMNIRLHQEMIMQSDKTIDARGVNVHITKGAGITLQYIKNVIIHGLHIHDIVEGNGGMVRDAVDHIGIRTKSDGDGISIFGASYIWIDHVSMQRCYDGLIDAVEGSTGITISNGHFTDHNEVMLFGASDSSSIDQVMQITLAFNHF-GKRLIQRMPRCRWGYIHVVNNDYTHWNMYAIGGSMHPTIIHQGNRFIA 366          
BLAST of BQ623501 vs. ExPASy Swiss-Prot
Match: PEL18_ARATH (Probable pectate lyase 18 OS=Arabidopsis thaliana GN=At4g24780 PE=2 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 9.683e-28
Identity = 77/215 (35.81%), Postives = 115/215 (53.49%), Query Frame = 1
Query:   13 PGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKG-LRLKECEHVIICNLEF----EGGKG--------------PDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTI-HHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEA 597
            PG+LR      EPLWI+F+   TI L+  L ++S+KTIDGRG  V ++G   + ++   ++II  +      +GG                 D D + I   S H+W+D CS  + +DGLID    ST IT+S  H + HDK ML+G   ++  D+ ++VTI  + F +G  QR PR R+   H+ NN   +W +YA+  S +  I SQ N + A
Sbjct:  114 PGTLRHAVVQDEPLWIIFQRDMTIQLKEELIMNSFKTIDGRGASVHISGGPCITIQYVTNIIIHGIHIHDCKQGGNAMVRSSPRHFGWRTISDGDGVSIFGGS-HVWVDHCSFSNCEDGLIDAIMGSTAITLSNNHMTHHDKVMLLGHSDTYSRDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLA 327          
BLAST of BQ623501 vs. ExPASy Swiss-Prot
Match: PEL7_ARATH (Probable pectate lyase 7 OS=Arabidopsis thaliana GN=At3g01270 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.652e-27
Identity = 83/235 (35.32%), Postives = 124/235 (52.77%), Query Frame = 1
Query:   13 PGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLT-GKGLRLKECEHVIICNLEFE-----------------GGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTI-HHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEK--ASDKE 651
            PG+LR     KEPLWIVF+   +I L   L ++S KTID RG  V +  G G+ ++   ++II  L                    G +G  D D I I   + +IW+D  S+    DGLID    ST IT+S  HF+ H+  ML+GA  +++ D+ ++VT+ ++ F  G  QR PRVR+  VH+ NN   +W +YA+  S    I S  N + A   K  ++ +T++  AS+ E
Sbjct:  179 PGTLRHAVIQKEPLWIVFKHDMSIRLSQELMITSDKTIDARGANVHIAYGAGITMQYVHNIIIHGLHVHHIVKSSGGLIRDSINHFGHRGEADGDGISIFGAT-NIWLDHISMSKCQDGLIDAIMGSTAITISNSHFTHHNDVMLLGAQNNNMDDKKMQVTVAYNHFGKGLVQRMPRVRWGFVHVVNNDYTHWELYAIGGSQGPTILSHGNRFIAPPHKQHYREVTKRDYASESE 412          
BLAST of BQ623501 vs. ExPASy Swiss-Prot
Match: PEL6_ARATH (Probable pectate lyase 6 OS=Arabidopsis thaliana GN=At2g02720 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.652e-27
Identity = 76/214 (35.51%), Postives = 117/214 (54.67%), Query Frame = 1
Query:   13 PGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTG-KGLRLKECEHVIICNLEFE----GGKGPDVDAIQ---IKPKSK----------HIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTI-HHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEA 597
            PG++R       PLWI+F  S  I L+  L +++ KTIDGRG ++ +TG  GL L+   +VII N+  +    G  G  +D+ Q   ++  S           ++WID  S+ D  DG+ID    ST IT+S  HF+ HD+ ML G     V D+ +++T+  + F    +QR PRVR+  VH+ NN   +W +YA+  +++  I SQ N + A
Sbjct:  155 PGTIRHAVTRDRPLWIIFARSMIIKLQQELIITNDKTIDGRGAKIYITGGAGLTLQFVRNVIIHNIHIKQIKRGAGGLIIDSEQHFGLRTVSDGDGINIFGATNVWIDHVSMTDCSDGMIDAIMGSTAITISNSHFTDHDEVMLFGGTNKDVIDKKMQITVAFNHFGKRLKQRMPRVRFGLVHVVNNDYTHWEMYAIGGNMNPTIISQGNRFIA 368          
BLAST of BQ623501 vs. ExPASy Swiss-Prot
Match: PEL_LILLO (Pectate lyase OS=Lilium longiflorum PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.157e-27
Identity = 84/214 (39.25%), Postives = 110/214 (51.40%), Query Frame = 1
Query:   16 GSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKG-LRLKECEHVIICNLEF------EGG------------KGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTI-HHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEA 597
            G+LR G     PLWI+F  S  I L+  L +++ KTIDGRG  V++ G   L ++   +VII  +        EGG               D D I I   S +IWID  SL    DGLID+   ST IT+S CH + HD  ML+GA  ++  D  ++VT+  + F  G  QR PR RY  VH+ NN   +W +YAV  S    I SQ N Y A
Sbjct:  141 GTLRWGVIQDRPLWIIFGKSMVIRLKQELIINNDKTIDGRGANVQIAGGAQLTVQFVHNVIIHGIHIHDIKPGEGGLIRDSEKHSGIRTRSDGDGISIIGSS-NIWIDHVSLARCSDGLIDVILGSTAITISNCHLTEHDDVMLLGASDTYTQDEIMQVTVAFNHFGRGLVQRMPRCRYGFVHVVNNDYTHWIMYAVGGSQHPTIISQGNRYIA 353          
BLAST of BQ623501 vs. ExPASy Swiss-Prot
Match: PEL1_ARATH (Probable pectate lyase 1 OS=Arabidopsis thaliana GN=At1g04680 PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 3.680e-27
Identity = 80/221 (36.20%), Postives = 111/221 (50.23%), Query Frame = 1
Query:   13 PGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKG-LRLKECEHVIICNLEFEGGKGP------------------DVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFD-GTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMA 615
            PG+LR       PLWIVF+    I L+  L V+S+KTIDGRG  V +   G + ++   +VI+  L     K                    D DAI I   S H+WID  SL    DGL+D    ST IT+S  H + H++ ML+G   S++ D+ ++VTI +  F  G  QR PR R+   H+ NN   +W +YA+  S +  I SQ N Y A +   A
Sbjct:  135 PGTLRHAVIQDRPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIVHGLHIHDCKPTGNAMVRSSETHFGWRTMADGDAISIFGSS-HVWIDHNSLSHCADGLVDAVMGSTAITISNNHLTHHNEVMLLGHSDSYMRDKAMQVTIAYNHFGVGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPKNPFA 354          
BLAST of BQ623501 vs. ExPASy Swiss-Prot
Match: PEL20_ARATH (Probable pectate lyase 20 OS=Arabidopsis thaliana GN=At5g48900 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.806e-27
Identity = 79/243 (32.51%), Postives = 123/243 (50.62%), Query Frame = 1
Query:   13 PGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLT-GKGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPK-----------------SKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTI-HHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEKASDKEEARSGCIRAEG 684
            PG+LR     +EPLWIVF+    I L+  L ++S+KTIDGRG  V +  G  + ++   ++II  +     +      ++  P                  S HIWID  SL +  DGLID    ST IT+S  +F+ H++ ML+G   ++  D+ ++VTI ++ F +G  QR PR R+   H+ NN   +W +YA+  S    I SQ N Y A + + A +      + + + R    R+EG
Sbjct:  123 PGTLRHAVIQEEPLWIVFKRDMVITLKEELIMNSFKTIDGRGVNVHIANGACITIQFVTNIIIHGIHIHDCRPTGNAMVRSSPSHYGWRTMADGDGISIFGSSHIWIDHNSLSNCADGLIDAVMASTAITISNNYFTHHNEVMLLGHSDTYTRDKVMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTINSQGNRYLAPRNRFAKEVTKRDYAGQWQWRHWNWRSEG 365          
BLAST of BQ623501 vs. ExPASy Swiss-Prot
Match: PEL12_ARATH (Probable pectate lyase 12 OS=Arabidopsis thaliana GN=At3g53190 PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 4.806e-27
Identity = 83/215 (38.60%), Postives = 111/215 (51.63%), Query Frame = 1
Query:   13 PGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKG-LRLKECEHVIICNLE----FEGGKG--------------PDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTI-HHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEA 597
            PG+LR G   +EPLWIVF  +  I L+  L  +SYKT+DGRG  V + G G + L+   ++II N+     ++ G                 D D I I   SK IWID CSL    DGLID    ST IT+S   FS H++ ML+G    +  D  ++VTI  + F +   QR PR R   +H+ NN    W +YA+  S +  I SQ N Y A
Sbjct:  128 PGTLRYGVIQEEPLWIVFPSNMMIKLKQELIFNSYKTLDGRGANVHIVGGGCITLQYVSNIIIHNIHIHHCYQSGNTNVRSSPTHYGFRTKSDGDGISIFG-SKDIWIDHCSLSRCKDGLIDAVMGSTGITISNNFFSHHNEVMLLGHSDHYEPDSGMQVTIAFNHFGEKLIQRMPRCRRGYIHVVNNDFTQWEMYAIGGSGNPTINSQGNRYTA 341          
The following BLAST results are available for this feature:
BLAST of BQ623501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
PEL3_ARATH5.677e-2834.69Probable pectate lyase 3 OS=Arabidopsis thaliana G... [more]
PEL_ZINEL9.683e-2834.84Pectate lyase OS=Zinnia elegans PE=1 SV=1[more]
PEL59_SOLLC9.683e-2838.53Probable pectate lyase P59 OS=Solanum lycopersicum... [more]
PEL18_ARATH9.683e-2835.81Probable pectate lyase 18 OS=Arabidopsis thaliana ... [more]
PEL7_ARATH1.652e-2735.32Probable pectate lyase 7 OS=Arabidopsis thaliana G... [more]
PEL6_ARATH1.652e-2735.51Probable pectate lyase 6 OS=Arabidopsis thaliana G... [more]
PEL_LILLO2.157e-2739.25Pectate lyase OS=Lilium longiflorum PE=2 SV=1[more]
PEL1_ARATH3.680e-2736.20Probable pectate lyase 1 OS=Arabidopsis thaliana G... [more]
PEL20_ARATH4.806e-2732.51Probable pectate lyase 20 OS=Arabidopsis thaliana ... [more]
PEL12_ARATH4.806e-2738.60Probable pectate lyase 12 OS=Arabidopsis thaliana ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00592 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00592 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623501 ID=BQ623501; Name=BQ623501; organism=Citrus sinensis; type=EST; length=692bp
GCTGATGACGGGCCAGGATCACTTCGAGAAGGATGCCGCATGAAAGAACC
TCTTTGGATTGTCTTTGAAGTGTCAGGCACCATTCATCTCCGCTCTCACT
TGAGTGTCTCATCTTACAAAACCATAGATGGCCGAGGACAAAGGGTGAAA
CTTACAGGAAAGGGTTTGAGGCTGAAGGAATGCGAACATGTTATAATATG
CAATCTAGAGTTTGAAGGTGGTAAAGGACCTGATGTTGATGCCATTCAAA
TAAAACCTAAGTCAAAACACATATGGATAGACCGTTGTAGTCTCCGTGAT
TATGATGATGGGCTGATAGATATCACCAGAGAAAGCACAGATATTACAGT
TTCTAGGTGTCACTTTTCATCACATGACAAGACCATGCTCATTGGAGCAG
ATCCCTCTCATGTTGCTGATAGATGTATTCGAGTGACCATTCATCATTGT
TTTTTTGATGGGACTCGACAACGACATCCACGTGTTAGATATGCTAAAGT
ACATCTGTATAACAATTACACCAGAAATTGGGGAATTTATGCTGTTTGTG
CCAGTGTTGATTCACAGATATACTCCCAATGTAATATATATGAAGCAGGA
CAGAAGAAGATGGCATTCAAGTATCTTACAGAGAAGGCATCAGACAAGGA
GGAGGCAAGATCTGGTTGCATAAGGGCTGAAGGGGGATTTGT
back to top