BQ623501

Overview
NameBQ623501
Unique NameBQ623501
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12683 contig Csv1_Contig12683:458..1149. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623501 vs. ExPASy Swiss-Prot
Match: PELE2_ERWCH (Pectate lyase E OS=Erwinia chrysanthemi GN=pelE PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.502e-16
Identity = 59/173 (34.10%), Postives = 83/173 (47.98%), Query Frame = 1
Query:   91 RSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNL----------EFEGGKG--PDVDAIQIKPKSKHIWIDRCSLRD-----------------YDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRC--IRVTIHHCFFDGTRQRHPRVRYAKVHLYNN 516
            RS +S+ S  TI G G + K T   L +K   +VI+ NL           +E G G   + DA+ I   + H+W+D  ++ D                   DG +DI R S  +TVS   F  HDKT+LIG   ++ +     +RVT H+  FD   +R PRVR+  VH YNN
Sbjct:  121 RSQISIPSNTTIIGIGNKGKFTNGSLVVKGVSNVILRNLYIETPVDVAPHYEEGDGWNAEWDAVVID-STDHVWVDHVTISDGSFTDDKYTTKNGEKYVQHDGSLDIKRGSDYVTVSNSRFELHDKTILIGHSDNNGSQDAGKLRVTFHNNLFDRVGERTPRVRFGSVHAYNN 292          
BLAST of BQ623501 vs. ExPASy Swiss-Prot
Match: PELE1_ERWCH (Pectate lyase E OS=Erwinia chrysanthemi GN=pelE PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.228e-14
Identity = 57/173 (32.95%), Postives = 82/173 (47.40%), Query Frame = 1
Query:   91 RSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNL----------EFEGGKG--PDVDAIQIKPKSKHIWIDRCSLRD-----------------YDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRC--IRVTIHHCFFDGTRQRHPRVRYAKVHLYNN 516
            RS +S+ S  TI G G   K T   L +K  ++VI+ NL           +E G G   + DA  I   S ++W+D  ++ D                   DG +DI + S  +T+S   F  HDKT+LIG   S+ +     +RVT H+  FD   +R PRVR+  +H YNN
Sbjct:  103 RSQISIPSNTTIIGVGSNGKFTNGSLVIKGVKNVILRNLYIETPVDVAPHYESGDGWNAEWDAAVID-NSTNVWVDHVTISDGSFTDDKYTTKDGEKYVQHDGALDIKKGSDYVTISYSRFELHDKTILIGHSDSNGSQDSGKLRVTFHNNVFDRVTERAPRVRFGSIHAYNN 274          
BLAST of BQ623501 vs. ExPASy Swiss-Prot
Match: PEL_BACSU (Pectate lyase OS=Bacillus subtilis GN=pel PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.094e-14
Identity = 60/214 (28.04%), Postives = 94/214 (43.93%), Query Frame = 1
Query:   91 RSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFE----------------GGKGPDVDAIQIKPKSKHIWIDRCSLRD-----------------YDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRC-IRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRN------------WGIYAVCASVDSQIYSQCNIYE 594
            R  + + +  TI G G   K+ G   ++K  ++VII N+EF+                G      D I I   + HIWID C+  D                 + DG  D +  +  IT+S  ++  HDK+ + G+  S  +D   +++T+HH  +    QR PRVR+ +VH+YNNY               WGI        S+IY+Q N+ +
Sbjct:  141 RVMVDIPANTTIVGSGTNAKVVGGNFQIKS-DNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGT-HIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQRAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGI-----GKSSKIYAQNNVID 347          
BLAST of BQ623501 vs. ExPASy Swiss-Prot
Match: PELD_ERWCH (Pectate lyase D OS=Erwinia chrysanthemi GN=pelD PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.094e-14
Identity = 58/173 (33.53%), Postives = 80/173 (46.24%), Query Frame = 1
Query:   91 RSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNL----------EFEGGKG--PDVDAIQIKPKSKHIWIDRCSLRD-----------------YDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRC--IRVTIHHCFFDGTRQRHPRVRYAKVHLYNN 516
            RS +SV S  TI G G   K T   L +K   +VI+ NL           +E G G   + DA  I   S  +W+D  ++ D                   DG +DI + S  +T+S   F  HDKT+LIG   S+ +     +RVT H+  FD   +R PRVR+  +H YNN
Sbjct:  109 RSQISVPSNTTIIGIGSNGKFTNGSLVIKGVSNVILRNLYIETPVDVAPHYEEGDGWNAEWDAAVID-NSTRVWVDHVTISDGSFTDDKYTTKNGEKYVQHDGALDIKKGSDYVTISSSRFELHDKTILIGHSDSNGSQDSGKLRVTFHNNVFDRVTERTPRVRFGSIHAYNN 280          
BLAST of BQ623501 vs. ExPASy Swiss-Prot
Match: PELA_EMENI (Pectate lyase OS=Emericella nidulans GN=pelA PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.094e-14
Identity = 62/199 (31.16%), Postives = 98/199 (49.25%), Query Frame = 1
Query:   22 LREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSL-------RDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRC--IRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIY 591
            L E      PL I+  VSG+I   + + V+S KTI G      +TG G  ++   +VI+ NL+       + DAI I   S ++W+D C L       +D  DGL+DI+  +  ITVS  +F  H K  LIG   ++  +    + VT  + ++     R P +R+A VH+ NNY  +     V   +D+Q+  Q + +
Sbjct:   64 LTEAAESDGPLTII--VSGSISGSAKIRVASDKTIFGESGS-SITGIGFYIRRVSNVIMRNLKISKVDADNGDAIGIDASS-NVWVDHCDLSGDLSGGKDDLDGLVDISHGAEWITVSNTYFHDHWKGSLIGHSDNNEDEDLGHLHVTYANNYWYNVYSRTPLIRFATVHIINNYWDSLIDTGVNCRMDAQVLIQSSAF 258          
BLAST of BQ623501 vs. ExPASy Swiss-Prot
Match: PEL_PSEMA (Pectate lyase OS=Pseudomonas marginalis GN=pel PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.960e-12
Identity = 62/233 (26.61%), Postives = 103/233 (44.21%), Query Frame = 1
Query:   61 VFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFE----------------GGKGPDVDAIQIKPKSKHIWIDRCSLRD-----------------YDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRC-IRVTIHHCFFDGTRQRHPRVRYAKVHLYNNY---TRNWGI----YAVCASVDSQIYSQCNIYE----AGQKKMAFKY 624
            V+  +  + +R  L +    TI G G   ++       KE + VII N+  E                G    + D + ++  + ++W+D  +  D                 + DG +D+   +  +T+S   F SH+K  LIG+  S   D   ++VTIH+  F+    R PRVRY +VHLYNNY   + +  +    YA     +S+I+S+ N +E    +G  K+A  Y
Sbjct:   96 VYTKTADMKVRGRLDIPGKTTIVGIGSNAEIREGFFYAKEND-VIIRNITVENPWDPEPIFDKDDGADGNWNSEYDGLTVEG-ANNVWVDHVTFTDGRRTDDQNGTEHERPKQHHDGALDVKNGANFVTISYSVFKSHEKNNLIGSSDSRTTDDGKLKVTIHNTLFENISARAPRVRYGQVHLYNNYHVGSTSHKVYPFSYAHGVGKNSKIFSERNAFEIAGISGCDKIAGDY 326          
BLAST of BQ623501 vs. ExPASy Swiss-Prot
Match: PEL_PSEFL (Pectate lyase OS=Pseudomonas fluorescens GN=pel PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.728e-12
Identity = 61/232 (26.29%), Postives = 102/232 (43.97%), Query Frame = 1
Query:   64 FEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFE----------------GGKGPDVDAIQIKPKSKHIWIDRCSLRD-----------------YDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRC-IRVTIHHCFFDGTRQRHPRVRYAKVHLYNNY---TRNWGI----YAVCASVDSQIYSQCNIYE----AGQKKMAFKY 624
            +  +  + +R  L +    TI G     ++    L  KE + VII N+  E                G    + D + I+  + ++W+D  +  D                 + DG +D+   +  +T+S   F SH+K  LIG+  S   D   ++VTIH+  F+    R PRVR+ +VHLYNNY   + +  +    YA     +S+I+S+ N +E    +G  K+A  Y
Sbjct:   97 YTTTADMKVRGRLDIPGKTTIVGTTSNAEIREGFLYAKEND-VIIRNITIENPWDPEPKWDPTDGSAGNWNSEYDGLTIEG-ANNVWVDHVTFTDGRRTDDQNGTANGRPKQHHDGALDVKNGANYVTISYSAFKSHEKNNLIGSSDSRTTDDGKLKVTIHNTLFENISARAPRVRFGQVHLYNNYHVGSTSHKVYPFSYAHGMGKNSKIFSERNAFEISGISGCDKIAGDY 326          
BLAST of BQ623501 vs. ExPASy Swiss-Prot
Match: PEL_PSEVI (Pectate lyase OS=Pseudomonas viridiflava GN=pel PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.659e-11
Identity = 50/179 (27.93%), Postives = 79/179 (44.13%), Query Frame = 1
Query:  163 GLRLKECEHVIICNLEFEGGKGPDVD--AIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRC-IRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEKASDKEEARSGCIRAEGGF 690
            GL ++   +V + ++ F  G+  D        +PK  H            DG +D+   +  +T+S   F SH+K  LIG+  S   D   ++VTIH+  F+    R PRVR+ +VHLYNNY           S    +Y     +  G+     K  +EK + +    SGC +  G +
Sbjct:  170 GLTIEGANNVWVDHVTFTDGRRTDDQNGTANGRPKQHH------------DGALDVKNGANYVTISYTAFKSHEKNNLIGSSDSRTTDDGKLKVTIHNSLFENISARAPRVRFGQVHLYNNYH--------VGSASHSVYPFSYAHGIGKSS---KIFSEKNAFEISGISGCTKIAGDY 325          
BLAST of BQ623501 vs. ExPASy Swiss-Prot
Match: PELA_DICD3 (Pectate lyase A OS=Dickeya dadantii (strain 3937) GN=pelA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.828e-11
Identity = 51/176 (28.98%), Postives = 81/176 (46.02%), Query Frame = 1
Query:   91 RSHLSVSSYKTIDGRGQRVKLTGKGLRLKECE---HVIICNL----------EFEGGKG--PDVDAIQIKPKSKHIWIDRCSLRD-----------------YDDGLIDITRESTDITVSRCHFSSHDKTMLIG-ADPSHVADR-CIRVTIHHCFFDGTRQRHPRVRYAKVHLYNN 516
            RS +++ +  T+ G G   K     L +   +   +VII N+           +E G G   + D + I   + H+W+D  ++ D                   DG +DI R S  +T+S   F  HDKTMLIG +D +   D+  + VT+ +  F+   +R PRVRY  +H +NN
Sbjct:  111 RSQINIPANTTVIGIGTDAKFINGSLIIDGTDGTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWDGMNITNGAHHVWVDHVTISDGSFTDDMYTTKDGETYVQHDGALDIKRGSDYVTISNSLFDQHDKTMLIGHSDTNSAQDKGKLHVTLFNNVFNRVTERAPRVRYGSIHSFNN 286          
BLAST of BQ623501 vs. ExPASy Swiss-Prot
Match: PELA_ERWCH (Pectate lyase A OS=Erwinia chrysanthemi GN=pelA PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.235e-11
Identity = 51/176 (28.98%), Postives = 81/176 (46.02%), Query Frame = 1
Query:   91 RSHLSVSSYKTIDGRGQRVKLTGKGLRLKECE---HVIICNL----------EFEGGKG--PDVDAIQIKPKSKHIWIDRCSLRDYD-----------------DGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVAD--RCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNN 516
            RS +++ +  T+ G G   K     L +   +   +VII N+           +E G G   + DA+ I   + H+WID  ++ D +                 DG +DI R S  +T+S      HDKTMLIG + ++ A     + VT+ +  F+   +R PRVRY  +H +NN
Sbjct:  112 RSQINIPANTTVIGLGTDAKFINGSLIIDGTDGTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWDAMNITNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDGALDIKRGSDYVTISNSLIDQHDKTMLIGHNDTNSAQDKGKLHVTLFNNVFNRVTERAPRVRYGSIHSFNN 287          
The following BLAST results are available for this feature:
BLAST of BQ623501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
PELE2_ERWCH8.502e-1634.10Pectate lyase E OS=Erwinia chrysanthemi GN=pelE PE... [more]
PELE1_ERWCH1.228e-1432.95Pectate lyase E OS=Erwinia chrysanthemi GN=pelE PE... [more]
PEL_BACSU2.094e-1428.04Pectate lyase OS=Bacillus subtilis GN=pel PE=1 SV=... [more]
PELD_ERWCH2.094e-1433.53Pectate lyase D OS=Erwinia chrysanthemi GN=pelD PE... [more]
PELA_EMENI2.094e-1431.16Pectate lyase OS=Emericella nidulans GN=pelA PE=2 ... [more]
PEL_PSEMA1.960e-1226.61Pectate lyase OS=Pseudomonas marginalis GN=pel PE=... [more]
PEL_PSEFL9.728e-1226.29Pectate lyase OS=Pseudomonas fluorescens GN=pel PE... [more]
PEL_PSEVI1.659e-1127.93Pectate lyase OS=Pseudomonas viridiflava GN=pel PE... [more]
PELA_DICD34.828e-1128.98Pectate lyase A OS=Dickeya dadantii (strain 3937) ... [more]
PELA_ERWCH8.235e-1128.98Pectate lyase A OS=Erwinia chrysanthemi GN=pelA PE... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00592 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00592 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623501 ID=BQ623501; Name=BQ623501; organism=Citrus sinensis; type=EST; length=692bp
GCTGATGACGGGCCAGGATCACTTCGAGAAGGATGCCGCATGAAAGAACC
TCTTTGGATTGTCTTTGAAGTGTCAGGCACCATTCATCTCCGCTCTCACT
TGAGTGTCTCATCTTACAAAACCATAGATGGCCGAGGACAAAGGGTGAAA
CTTACAGGAAAGGGTTTGAGGCTGAAGGAATGCGAACATGTTATAATATG
CAATCTAGAGTTTGAAGGTGGTAAAGGACCTGATGTTGATGCCATTCAAA
TAAAACCTAAGTCAAAACACATATGGATAGACCGTTGTAGTCTCCGTGAT
TATGATGATGGGCTGATAGATATCACCAGAGAAAGCACAGATATTACAGT
TTCTAGGTGTCACTTTTCATCACATGACAAGACCATGCTCATTGGAGCAG
ATCCCTCTCATGTTGCTGATAGATGTATTCGAGTGACCATTCATCATTGT
TTTTTTGATGGGACTCGACAACGACATCCACGTGTTAGATATGCTAAAGT
ACATCTGTATAACAATTACACCAGAAATTGGGGAATTTATGCTGTTTGTG
CCAGTGTTGATTCACAGATATACTCCCAATGTAATATATATGAAGCAGGA
CAGAAGAAGATGGCATTCAAGTATCTTACAGAGAAGGCATCAGACAAGGA
GGAGGCAAGATCTGGTTGCATAAGGGCTGAAGGGGGATTTGT
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