BQ623506

Overview
NameBQ623506
Unique NameBQ623506
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9255 contig Csv1_Contig9255:366..1045. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623506 vs. ExPASy Swiss-Prot
Match: UCRI_SYNP6 (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petC PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.861e-53
Identity = 90/132 (68.18%), Postives = 107/132 (81.06%), Query Frame = 3
Query:    6 GSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 401
            G +GGG  AKDA+GND++ + +L  H  GDRTL +GLKGDPTYLVVE  + +  YGINAVCTHLGCVVPWN++ENKF CPCHGSQY+  G+VVRGPAPLSLALAH ++ + KV   PWTETDFRTG+ PWWA
Sbjct:   48 GGSGGGVAAKDALGNDVVLSKFLADHNVGDRTLVQGLKGDPTYLVVESSEAIGDYGINAVCTHLGCVVPWNASENKFKCPCHGSQYDATGKVVRGPAPLSLALAHVSVTDDKVFLSPWTETDFRTGDNPWWA 179          
BLAST of BQ623506 vs. ExPASy Swiss-Prot
Match: UCRI_SYNE7 (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus elongatus (strain PCC 7942) GN=petC PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.861e-53
Identity = 90/132 (68.18%), Postives = 107/132 (81.06%), Query Frame = 3
Query:    6 GSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 401
            G +GGG  AKDA+GND++ + +L  H  GDRTL +GLKGDPTYLVVE  + +  YGINAVCTHLGCVVPWN++ENKF CPCHGSQY+  G+VVRGPAPLSLALAH ++ + KV   PWTETDFRTG+ PWWA
Sbjct:   48 GGSGGGVAAKDALGNDVVLSKFLADHNVGDRTLVQGLKGDPTYLVVESSEAIGDYGINAVCTHLGCVVPWNASENKFKCPCHGSQYDATGKVVRGPAPLSLALAHVSVTDDKVFLSPWTETDFRTGDNPWWA 179          
BLAST of BQ623506 vs. ExPASy Swiss-Prot
Match: UCRI_MASLA (Cytochrome b6-f complex iron-sulfur subunit OS=Mastigocladus laminosus GN=petC PE=1 SV=2)

HSP 1 Score: 207.608 bits (527), Expect = 4.881e-53
Identity = 87/131 (66.41%), Postives = 106/131 (80.92%), Query Frame = 3
Query:    6 GSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 398
            G+ GGGTTAKD +GN++  + +L +H  GDR L +GLKGDPTY+VVE  + +  YGINAVCTHLGCVVPWN+AENKF CPCHGSQY+  G+V+RGPAPLSLAL HA +++  +V  PWTETDFRTGE PWW
Sbjct:   48 GAVGGGTTAKDKLGNNVKVSKFLESHNAGDRVLVQGLKGDPTYIVVESKEAIRDYGINAVCTHLGCVVPWNAAENKFKCPCHGSQYDETGKVIRGPAPLSLALCHATVQDDNIVLTPWTETDFRTGEKPWW 178          
BLAST of BQ623506 vs. ExPASy Swiss-Prot
Match: UCRI_SYNPW (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain WH7803) GN=petC PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 6.375e-53
Identity = 89/130 (68.46%), Postives = 107/130 (82.31%), Query Frame = 3
Query:   12 AGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 401
            +GGGT+AKD +GN + A+ WL+TH  GDR+L +GLKGDPTYL+VE D  + SYGINA+CTHLGCVVPWNS  NKF+CPCHGSQY+  G+VVRGPAPLSLALA+ ++EN  V    WT+TDFRTGE PWWA
Sbjct:   49 SGGGTSAKDELGNAVTASGWLSTHPAGDRSLVQGLKGDPTYLIVEGDDAIGSYGINAICTHLGCVVPWNSGANKFMCPCHGSQYDATGKVVRGPAPLSLALANVSVENDNVFVSQWTDTDFRTGEKPWWA 178          
BLAST of BQ623506 vs. ExPASy Swiss-Prot
Match: UCRI_PROMM (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9313) GN=petC PE=3 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 6.375e-53
Identity = 89/129 (68.99%), Postives = 104/129 (80.62%), Query Frame = 3
Query:   12 AGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 398
            +GGGT+AKD +GN + A+ WL  H  GDR+L +GLKGDPTYL+VE D  + SYGINA+CTHLGCVVPWNS  NKF+CPCHGSQYN+ G+VVRGPAPLSLALA+  +EN  V    WTETDFRTGE PWW
Sbjct:   49 SGGGTSAKDELGNSVTASGWLANHSDGDRSLVQGLKGDPTYLIVEGDDAIGSYGINAICTHLGCVVPWNSGVNKFVCPCHGSQYNSTGKVVRGPAPLSLALANIAVENDNVFVSQWTETDFRTGEKPWW 177          
BLAST of BQ623506 vs. ExPASy Swiss-Prot
Match: UCRI_PROM3 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9303) GN=petC PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 6.375e-53
Identity = 89/129 (68.99%), Postives = 104/129 (80.62%), Query Frame = 3
Query:   12 AGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 398
            +GGGT+AKD +GN + A+ WL  H  GDR+L +GLKGDPTYL+VE D  + SYGINA+CTHLGCVVPWNS  NKF+CPCHGSQYN+ G+VVRGPAPLSLALA+  +EN  V    WTETDFRTGE PWW
Sbjct:   49 SGGGTSAKDELGNSVTASGWLANHSDGDRSLVQGLKGDPTYLIVEGDDAIGSYGINAICTHLGCVVPWNSGVNKFVCPCHGSQYNSTGKVVRGPAPLSLALANIAVENDNVFVSQWTETDFRTGEKPWW 177          
BLAST of BQ623506 vs. ExPASy Swiss-Prot
Match: UCRI_SYNSC (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain CC9605) GN=petC PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.420e-52
Identity = 88/130 (67.69%), Postives = 108/130 (83.08%), Query Frame = 3
Query:   12 AGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 401
            +GGGT+AKD +GN I A+ WL++H  GDR+L +GLKGDPTYL+VE +  + SYGINA+CTHLGCVVPWNS  NKF+CPCHGSQY++ G+VVRGPAPLSLALA+ ++EN  V    WTETDFRTG+ PWWA
Sbjct:   49 SGGGTSAKDELGNPITASGWLSSHPEGDRSLVQGLKGDPTYLIVEGEDAIGSYGINAICTHLGCVVPWNSGANKFMCPCHGSQYDSTGKVVRGPAPLSLALANVSVENDNVFVSQWTETDFRTGDKPWWA 178          
BLAST of BQ623506 vs. ExPASy Swiss-Prot
Match: UCRI_PROMT (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain NATL2A) GN=petC PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.420e-52
Identity = 87/131 (66.41%), Postives = 108/131 (82.44%), Query Frame = 3
Query:    6 GSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 398
            G  GGGT AKD +GN++ A+ WL+TH  GDR+L +GLKGDPTYL+VE +  + SYGINA+CTHLGCVVPWNS  NK++CPCHGSQY++ G+VVRGPAPLSLA+AH +IE+ +V+   WTETDFRTG  PWW
Sbjct:   47 GGGGGGTNAKDELGNNVSASGWLSTHPVGDRSLVQGLKGDPTYLIVEGEDAITSYGINAICTHLGCVVPWNSGANKYMCPCHGSQYDSTGKVVRGPAPLSLAIAHVSIEDDQVLVSQWTETDFRTGTDPWW 177          
BLAST of BQ623506 vs. ExPASy Swiss-Prot
Match: UCRI_PROM1 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain NATL1A) GN=petC PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.420e-52
Identity = 87/131 (66.41%), Postives = 108/131 (82.44%), Query Frame = 3
Query:    6 GSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 398
            G  GGGT AKD +GN++ A+ WL+TH  GDR+L +GLKGDPTYL+VE +  + SYGINA+CTHLGCVVPWNS  NK++CPCHGSQY++ G+VVRGPAPLSLA+AH +IE+ +V+   WTETDFRTG  PWW
Sbjct:   47 GGGGGGTNAKDELGNNVSASGWLSTHPVGDRSLVQGLKGDPTYLIVEGEDAITSYGINAICTHLGCVVPWNSGANKYMCPCHGSQYDSTGKVVRGPAPLSLAIAHVSIEDDQVLVSQWTETDFRTGTDPWW 177          
BLAST of BQ623506 vs. ExPASy Swiss-Prot
Match: UCRI_SYNPX (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain WH8102) GN=petC PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.855e-52
Identity = 90/130 (69.23%), Postives = 105/130 (80.77%), Query Frame = 3
Query:   12 AGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 401
            AGGGTTAKD +GN I A  WL++H  GDR+L +GLKGDPTYL+VE    + SYGINA+CTHLGCVVPWNS  NKF+CPCHGSQY+  G+VVRGPAPLSLALA+ ++EN  V    WTETDFRTG+ PWWA
Sbjct:   49 AGGGTTAKDELGNAITATGWLSSHPEGDRSLVQGLKGDPTYLIVEGPDAIGSYGINAICTHLGCVVPWNSGANKFMCPCHGSQYDATGKVVRGPAPLSLALANVSVENDNVFVSQWTETDFRTGDKPWWA 178          
The following BLAST results are available for this feature:
BLAST of BQ623506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
UCRI_SYNP62.861e-5368.18Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_SYNE72.861e-5368.18Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_MASLA4.881e-5366.41Cytochrome b6-f complex iron-sulfur subunit OS=Mas... [more]
UCRI_SYNPW6.375e-5368.46Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_PROMM6.375e-5368.99Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM36.375e-5368.99Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_SYNSC1.420e-5267.69Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_PROMT1.420e-5266.41Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM11.420e-5266.41Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_SYNPX1.855e-5269.23Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00597 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00597 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623506 ID=BQ623506; Name=BQ623506; organism=Citrus sinensis; type=EST; length=679bp
GTTTAGGAAGTGCTGGTGGTGGTACTACTGCCAAGGATGCCATTGGCAAT
GACATCATTGCCGCTGATTGGCTTAACACGCACGGCCCTGGGGACCGAAC
CCTCACCGAAGGATTGAAGGGAGATCCAACCTACCTTGTTGTGGAAAAAG
ACAAAACACTTGCATCATATGGAATCAATGCTGTCTGCACTCACCTTGGA
TGTGTGGTGCCATGGAATTCAGCTGAGAACAAGTTCATCTGTCCCTGCCA
CGGATCCCAATACAATAACCAAGGAAGAGTTGTGAGAGGGCCTGCTCCAT
TGTCATTGGCATTGGCTCATGCCAACATTGAAAATGGTAAGGTAGTCTTC
GTTCCATGGACGGAAACAGATTTCAGAACTGGTGAAGCTCCATGGTGGGC
TTAAACTTGTTCCGGTGCCTGTGCTTTCAATATTCAAGTTTTGGCCGGTC
GGTTTGCTTTGCCGTACTGCATAAACATACTGTAACGGAACATGCTTTAT
CAGAATGAAGCTTACAACATGTAAAGCTACTTGGCTTGAATCATGCTATC
TTGTAATCTTGGCAATCTTGACAATTTTCTCTTATCCATTCATTCTTTGA
TCTCAAAAATTCATACGCTCAACAATGTAATGCTACAGCTTCAACGTTGG
ATATAAGTTTTATCATTTATTAAGTAAAA
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