BQ623506

Overview
NameBQ623506
Unique NameBQ623506
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9255 contig Csv1_Contig9255:366..1045. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623506 vs. ExPASy Swiss-Prot
Match: UCRI_PROM9 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9312) GN=petC PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 8.616e-50
Identity = 84/132 (63.64%), Postives = 102/132 (77.27%), Query Frame = 3
Query:    6 GSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 401
            G  GGGT+AKD +GN +    WL TH  GDR+L +GLKGDPTYL+V +   +  +G+NA+CTHLGCVVPW+S  NKFICPCHGSQY+  G+VVRGPAPLSLALAH +IE+  V+   W+ETDFRT E PWWA
Sbjct:   47 GGGGGGTSAKDELGNPVTKTGWLATHQAGDRSLVQGLKGDPTYLIVNEGGEIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDIEDDAVLVKQWSETDFRTNENPWWA 178          
BLAST of BQ623506 vs. ExPASy Swiss-Prot
Match: UCRI_PROM2 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9215) GN=petC PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 8.616e-50
Identity = 85/132 (64.39%), Postives = 102/132 (77.27%), Query Frame = 3
Query:    6 GSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 401
            G  GGGT+AKD +GN I    WL TH  GDR+L +GLKGDPTYL+V +   +  +G+NA+CTHLGCVVPW+S  NKFICPCHGSQY+  G+VVRGPAPLSLALAH +IE+  V+   W+ETDFRT E PWWA
Sbjct:   47 GGGGGGTSAKDELGNPITKTGWLATHQAGDRSLVQGLKGDPTYLIVNEGGGIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDIEDDAVLVKQWSETDFRTNENPWWA 178          
BLAST of BQ623506 vs. ExPASy Swiss-Prot
Match: UCRI_PROM0 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9301) GN=petC PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.125e-49
Identity = 85/132 (64.39%), Postives = 102/132 (77.27%), Query Frame = 3
Query:    6 GSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 401
            G  GGGT+AKD +GN I    WL TH  GDR+L +GLKGDPTYL+V +   +  +G+NA+CTHLGCVVPW+S  NKFICPCHGSQY+  G+VVRGPAPLSLALAH +IE+  V+   W+ETDFRT E PWWA
Sbjct:   47 GGGGGGTSAKDELGNPITKTGWLATHQAGDRSLVQGLKGDPTYLIVNEVGEIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDIEDDAVLVKQWSETDFRTNENPWWA 178          
BLAST of BQ623506 vs. ExPASy Swiss-Prot
Match: UCRI_PROMP (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=petC PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.276e-49
Identity = 81/132 (61.36%), Postives = 102/132 (77.27%), Query Frame = 3
Query:    6 GSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 401
            G  GGGT+AKD +GN +    WL +H  GDR+L +GLKGDPTYL+V  +  +  +G+NA+CTHLGCVVPW+S  NKFICPCHGSQY+  G+VVRGPAPLSLALAH ++++  V+   W+ETDFRT E PWWA
Sbjct:   47 GGGGGGTSAKDELGNPVTKTGWLASHQAGDRSLVQGLKGDPTYLIVNSEGEIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDVDDDAVLVKQWSETDFRTNENPWWA 178          
BLAST of BQ623506 vs. ExPASy Swiss-Prot
Match: UCRI_PROM5 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9515) GN=petC PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.584e-49
Identity = 81/132 (61.36%), Postives = 101/132 (76.52%), Query Frame = 3
Query:    6 GSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 401
            G  GGGT+AKD +GN +    WL  H  GDR+L +GLKGDPTYL+V  +  +  +G+NA+CTHLGCVVPW+S  NKFICPCHGSQY+  G+VVRGPAPLSLALAH ++++  V+   W+ETDFRT E PWWA
Sbjct:   47 GGGGGGTSAKDELGNPVTKTGWLANHQAGDRSLVQGLKGDPTYLIVNSEGDIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDVDDDAVLVKQWSETDFRTNENPWWA 178          
BLAST of BQ623506 vs. ExPASy Swiss-Prot
Match: UCRIA_BIGNA (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Bigelowiella natans GN=petC PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.986e-46
Identity = 82/133 (61.65%), Postives = 95/133 (71.43%), Query Frame = 3
Query:    6 GSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKD-KTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 401
            G  GG   A DA+GN + A  W  +H    R L +G+KGDPTYL+V  D  TL SYG+NA+CTHLGCVVPW++A NKF CPCHGSQY   G VVRGPAP  L LAH   +NGK++  PWTETDFRTGE PWWA
Sbjct:  120 GGGGGAVGALDALGNPVSAESWFKSHKKNARDLVQGIKGDPTYLIVNDDGSTLNSYGLNAICTHLGCVVPWDAASNKFKCPCHGSQYAPDGHVVRGPAPRPLQLAHVEDDNGKILLSPWTETDFRTGEKPWWA 252          
BLAST of BQ623506 vs. ExPASy Swiss-Prot
Match: UCRI_SYNJA (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain JA-3-3Ab) GN=petC PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.427e-36
Identity = 70/124 (56.45%), Postives = 86/124 (69.35%), Query Frame = 3
Query:    6 GSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFR 377
            G AG G  A+DA+G  I  ++ L TH   DR L +GLKGDPTY+V++    +A+YG+NAVCTHLGCVVPWN+ EN F CPCHGSQY   G+V+RGPAP SL L  A ++   V F PW   DFR
Sbjct:   48 GGAGEGVIAQDALGKPISVSELLATHAATDRVLAQGLKGDPTYIVIDNG-AVANYGLNAVCTHLGCVVPWNAGENLFKCPCHGSQYAANGKVIRGPAPRSLELVSATVDGDNVRFSPWQGPDFR 170          
BLAST of BQ623506 vs. ExPASy Swiss-Prot
Match: UCRI_SYNJB (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. GN=petC PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.208e-35
Identity = 69/124 (55.65%), Postives = 84/124 (67.74%), Query Frame = 3
Query:    6 GSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFR 377
            G  G G  A+DA+G  I  ++ L TH   DR L +GLKGDPTY+V++    +A+YG+NAVCTHLGCVVPWN  EN F CPCHGSQY   G+V+RGPAP SL L  A ++   V F PW   DFR
Sbjct:   48 GGGGEGLIAQDALGKPISVSELLATHAATDRVLAQGLKGDPTYIVIDNG-AVANYGLNAVCTHLGCVVPWNVGENLFKCPCHGSQYAANGKVIRGPAPRSLELVSATVDGDNVRFSPWQGPDFR 170          
BLAST of BQ623506 vs. ExPASy Swiss-Prot
Match: UCRIA_SYNY3 (Cytochrome b6-f complex iron-sulfur subunit 1 OS=Synechocystis sp. (strain PCC 6803) GN=petC1 PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.691e-35
Identity = 68/131 (51.91%), Postives = 84/131 (64.12%), Query Frame = 3
Query:    6 GSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 398
            G AGGG  AKD +GN I A+  L    PG R L  GL GDPTYL+V++D +L S GI   CTHLGC  PWN  + +F CPCHGS+Y+  G V RGPAPL L +    + + ++   PWT+ D RTGE PWW
Sbjct:   48 GGAGGGIIAKDVLGNPIPASQIL-AEAPGTRALVAGLAGDPTYLIVKEDGSLDSIGIVDSCTHLGCTFPWNGNDQEFQCPCHGSRYHPDGSVARGPAPLPLKIVQVAVVDDQIFISPWTDLDPRTGEKPWW 177          
BLAST of BQ623506 vs. ExPASy Swiss-Prot
Match: UCRIC_ANASP (Cytochrome b6-f complex iron-sulfur subunit 3 OS=Anabaena sp. (strain PCC 7120) GN=petC3 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.749e-32
Identity = 64/129 (49.61%), Postives = 80/129 (62.02%), Query Frame = 3
Query:   12 AGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 398
            AGG   AKD +G  I A+  L    P  R L  GL G+PTYL+V++D TL   G+   CTHLGC  PWN  + +F CPCHGS+Y   G VVRGPAPL L +    + +  ++  PWTETD RTG+ PWW
Sbjct:   50 AGGAILAKDILGKQIPASQIL-AEPPQTRALVAGLAGEPTYLIVKEDHTLDRIGLVDNCTHLGCTFPWNPLDQQFQCPCHGSRYAPDGSVVRGPAPLPLKIVQVAVIDNSILISPWTETDPRTGKKPWW 177          
The following BLAST results are available for this feature:
BLAST of BQ623506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
UCRI_PROM98.616e-5063.64Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM28.616e-5064.39Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM01.125e-4964.39Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROMP4.276e-4961.36Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM55.584e-4961.36Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRIA_BIGNA1.986e-4661.65Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRI_SYNJA1.427e-3656.45Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_SYNJB1.208e-3555.65Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRIA_SYNY32.691e-3551.91Cytochrome b6-f complex iron-sulfur subunit 1 OS=S... [more]
UCRIC_ANASP4.749e-3249.61Cytochrome b6-f complex iron-sulfur subunit 3 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00597 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00597 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623506 ID=BQ623506; Name=BQ623506; organism=Citrus sinensis; type=EST; length=679bp
GTTTAGGAAGTGCTGGTGGTGGTACTACTGCCAAGGATGCCATTGGCAAT
GACATCATTGCCGCTGATTGGCTTAACACGCACGGCCCTGGGGACCGAAC
CCTCACCGAAGGATTGAAGGGAGATCCAACCTACCTTGTTGTGGAAAAAG
ACAAAACACTTGCATCATATGGAATCAATGCTGTCTGCACTCACCTTGGA
TGTGTGGTGCCATGGAATTCAGCTGAGAACAAGTTCATCTGTCCCTGCCA
CGGATCCCAATACAATAACCAAGGAAGAGTTGTGAGAGGGCCTGCTCCAT
TGTCATTGGCATTGGCTCATGCCAACATTGAAAATGGTAAGGTAGTCTTC
GTTCCATGGACGGAAACAGATTTCAGAACTGGTGAAGCTCCATGGTGGGC
TTAAACTTGTTCCGGTGCCTGTGCTTTCAATATTCAAGTTTTGGCCGGTC
GGTTTGCTTTGCCGTACTGCATAAACATACTGTAACGGAACATGCTTTAT
CAGAATGAAGCTTACAACATGTAAAGCTACTTGGCTTGAATCATGCTATC
TTGTAATCTTGGCAATCTTGACAATTTTCTCTTATCCATTCATTCTTTGA
TCTCAAAAATTCATACGCTCAACAATGTAATGCTACAGCTTCAACGTTGG
ATATAAGTTTTATCATTTATTAAGTAAAA
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