BQ623508

Overview
NameBQ623508
Unique NameBQ623508
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length649
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623508 vs. ExPASy Swiss-Prot
Match: ERF3_CANAL (Eukaryotic peptide chain release factor GTP-binding subunit OS=Candida albicans GN=SUP35 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.912e-16
Identity = 45/150 (30.00%), Postives = 81/150 (54.00%), Query Frame = 2
Query:    2 LSLLRCTTKLCRRPFRVTMLAFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVI 451
            L++   T + C   F    +   +K +  +DL+ G+V ++ K+ P +    F +Q+ I+     + NG++ V+  HT+   VKF EL  K+++ + ++ +K P F K G   +  +   + +  ET+ DYP LGRF +RD   T+A+G I
Sbjct:  563 LTIFNETEQECDTAFSGEQVRLKIKGIEEEDLQPGYVLTSPKN-PVKTVTRFEAQIAIVELKSILSNGFSCVMHLHTAIEEVKFIELKHKLEKGTNRKSKKPPAFAKKGMKIIAILEVGELVCAETYKDYPQLGRFTLRDQGTTIAIGKI 711          
BLAST of BQ623508 vs. ExPASy Swiss-Prot
Match: ERF3A_HUMAN (Eukaryotic peptide chain release factor GTP-binding subunit ERF3A OS=Homo sapiens GN=GSPT1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.431e-14
Identity = 41/139 (29.50%), Postives = 78/139 (56.12%), Query Frame = 2
Query:   59 LAFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVG-VIKSVEKKD 472
            L   +K +  +++  GF+  +  ++       F +Q++I+ H   I  GY  VL  HT    V+ + L+  +D++SG++ +  P+F+K     + ++     + +ETF D+P +GRF +RD  +T+A+G V+K V +KD
Sbjct:  362 LKIRLKGIEEEEILPGFILCDP-NNLCHSGRTFDAQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALICLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVPEKD 499          
BLAST of BQ623508 vs. ExPASy Swiss-Prot
Match: ERF3_YEAST (Eukaryotic peptide chain release factor GTP-binding subunit OS=Saccharomyces cerevisiae GN=SUP35 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.869e-14
Identity = 41/130 (31.54%), Postives = 72/130 (55.38%), Query Frame = 2
Query:   71 VKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 460
            +K V  +D+  GFV ++ K+ P +    F +Q+ I+     I  G++ V+  HT+   V   +L+ K+++ + ++ +K P F K G   +  +    P+ VET+ DYP LGRF +RD   T+A+G I  +
Sbjct:  555 IKGVEEEDISPGFVLTSPKN-PIKSVTKFVAQIAIVELKSIIAAGFSCVMHVHTAIEEVHIVKLLHKLEKGTNRKSKKPPAFAKKGMKVIAVLETEAPVCVETYQDYPQLGRFTLRDQGTTIAIGKIVKI 683          
BLAST of BQ623508 vs. ExPASy Swiss-Prot
Match: ERF3_KLULA (Eukaryotic peptide chain release factor GTP-binding subunit OS=Kluyveromyces lactis GN=SUP35 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.869e-14
Identity = 40/130 (30.77%), Postives = 73/130 (56.15%), Query Frame = 2
Query:   71 VKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 460
            +K V  +++  GFV ++ K+ P +    F +Q+ I+     +  G++ V+  HT+   V  + L+ K+++ S ++ +K P F K G   +  +   +P+ VET+ DYP LGRF +RD   T+A+G I  +
Sbjct:  569 IKGVEEEEISAGFVLTSPKN-PVKNVTRFVAQIAIVELKSIMSAGFSCVMHIHTAIEEVTVTRLLHKLEKGSNRKSKKPPAFAKKGMKIIAVIETNEPVCVETYDDYPQLGRFTLRDQGTTIAIGKIVKI 697          
BLAST of BQ623508 vs. ExPASy Swiss-Prot
Match: ERF3A_MOUSE (Eukaryotic peptide chain release factor GTP-binding subunit ERF3A OS=Mus musculus GN=Gspt1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.869e-14
Identity = 41/139 (29.50%), Postives = 78/139 (56.12%), Query Frame = 2
Query:   59 LAFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVG-VIKSVEKKD 472
            L   +K +  +++  GF+  +  ++       F +Q++I+ H   I  GY  VL  HT    V+ + L+  +D++SG++ +  P+F+K     + ++     + +ETF D+P +GRF +RD  +T+A+G V+K V +KD
Sbjct:  362 LKIRLKGIEEEEILPGFILCDL-NNLCHSGRTFDAQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALICLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVPEKD 499          
BLAST of BQ623508 vs. ExPASy Swiss-Prot
Match: ERF3_PICPI (Eukaryotic peptide chain release factor GTP-binding subunit OS=Pichia pinus GN=SUP2 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.441e-14
Identity = 38/127 (29.92%), Postives = 72/127 (56.69%), Query Frame = 2
Query:   71 VKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVI 451
            ++ +  +DL  G+V S S + P +    F +Q+ I+     +  G++ V+  HT+   V F++L+  + + + +  +K P F K G   +  +  T+P+ +E++ DYP LGRF +RD  QT+A+G +
Sbjct:  612 LRGIEEEDLSAGYVLS-SINHPVKTVTRFEAQIAIVELKSILSTGFSCVMHVHTAIEEVTFTQLLHNLQKGTNRRSKKAPAFAKQGMKIIAVLETTEPVCIESYDDYPQLGRFTLRDQGQTIAIGKV 737          
BLAST of BQ623508 vs. ExPASy Swiss-Prot
Match: ERF3_DEBHA (Eukaryotic peptide chain release factor GTP-binding subunit OS=Debaryomyces hansenii GN=SUP35 PE=3 SV=4)

HSP 1 Score: 78.9518 bits (193), Expect = 2.441e-14
Identity = 45/147 (30.61%), Postives = 76/147 (51.70%), Query Frame = 2
Query:   20 TTKLCRRPFRVTMLAFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 460
            T + C   F    +   +K V  +DL  G+V + S   P +    F +Q+ I+     + NG++ V+  HT+   V F EL  K+++ + ++ +K P F K G   +  +   + +  ET++DYP LGRF +RD   T+A+G I  V
Sbjct:  555 TEQECDAAFCGEQVRLKIKGVEEEDLAPGYVLT-SPLKPIKTITRFEAQIAIVELKSILSNGFSCVMHLHTAIEEVTFIELKHKLEKGTNRKSKKPPAFAKKGMKVIAILETNESVCAETYADYPQLGRFTLRDQGTTIAIGKITKV 700          
BLAST of BQ623508 vs. ExPASy Swiss-Prot
Match: ERF3B_PONAB (Eukaryotic peptide chain release factor GTP-binding subunit ERF3B OS=Pongo abelii GN=GSPT2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.441e-14
Identity = 41/139 (29.50%), Postives = 77/139 (55.40%), Query Frame = 2
Query:   59 LAFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVG-VIKSVEKKD 472
            L   +K +  +++  GF+  +  +        F  Q++I+ H   I  GY  VL  HT    V+ + L++ +D++SG++ +  P+F+K     + ++     + +ETF D+P +GRF +RD  +T+A+G V+K V +KD
Sbjct:  491 LKIRLKGIEEEEILPGFILCDPSN-LCHSGRTFDVQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVPEKD 628          
BLAST of BQ623508 vs. ExPASy Swiss-Prot
Match: ERF3B_HUMAN (Eukaryotic peptide chain release factor GTP-binding subunit ERF3B OS=Homo sapiens GN=GSPT2 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.441e-14
Identity = 41/139 (29.50%), Postives = 77/139 (55.40%), Query Frame = 2
Query:   59 LAFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVG-VIKSVEKKD 472
            L   +K +  +++  GF+  +  +        F  Q++I+ H   I  GY  VL  HT    V+ + L++ +D++SG++ +  P+F+K     + ++     + +ETF D+P +GRF +RD  +T+A+G V+K V +KD
Sbjct:  491 LKIRLKGIEEEEILPGFILCDPSN-LCHSGRTFDVQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVPEKD 628          
BLAST of BQ623508 vs. ExPASy Swiss-Prot
Match: ERF3B_MOUSE (Eukaryotic peptide chain release factor GTP-binding subunit ERF3B OS=Mus musculus GN=Gspt2 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.189e-14
Identity = 41/139 (29.50%), Postives = 76/139 (54.68%), Query Frame = 2
Query:   59 LAFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVG-VIKSVEKKD 472
            L   +K +  +++  GF+     +        F  Q++I+ H   I  GY  VL  HT    V+ + L++ +D++SG++ +  P+F+K     + ++     + +ETF D+P +GRF +RD  +T+A+G V+K V +KD
Sbjct:  495 LKIRLKGIEEEEILPGFILCEPSN-LCHSGRTFDVQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVPEKD 632          
The following BLAST results are available for this feature:
BLAST of BQ623508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
ERF3_CANAL9.912e-1630.00Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3A_HUMAN1.431e-1429.50Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_YEAST1.869e-1431.54Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_KLULA1.869e-1430.77Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3A_MOUSE1.869e-1429.50Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_PICPI2.441e-1429.92Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_DEBHA2.441e-1430.61Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3B_PONAB2.441e-1429.50Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3B_HUMAN2.441e-1429.50Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3B_MOUSE3.189e-1429.50Eukaryotic peptide chain release factor GTP-bindin... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00599 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00599 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623508 ID=BQ623508; Name=BQ623508; organism=Citrus sinensis; type=EST; length=649bp
GTTAAGTCTGTTGAGATGCACCACGAAGCTCTGCAGGAGGCCCTTCCGGG
TGACAATGTTGGCCTTCAACGTGAAGAACGTTGCTGTCAAGGATCTCAAG
CGTGGTTTTGTTGCTTCCAACTCGAAGGATGATCCGGCCAGGGAAGCTGC
CAACTTCACTTCACAGGTCATCATCATGAACCATCCTGGCCAGATTGGAA
ATGGATATGCCCCAGTGCTTGACTGCCACACCTCCCACATTGCCGTCAAG
TTTTCTGAGCTCGTGACGAAGATTGATAGGCGATCAGGCAAGGAGCTTGA
GAAGGAGCCCAAGTTCTTGAAGAATGGAGATGCCGGAATGGTTAAGATGA
TTCCCACCAAGCCCATGGTTGTTGAGACATTCTCCGACTACCCACCCCTT
GGTCGTTTTGCTGTTAGGGACATGCGTCAGACTGTTGCTGTGGGTGTTAT
CAAGAGTGTTGAGAAGAAGGATCCCACAGGTGCCAAGGTCACCAAGTCCG
CAGCCAAGAAGAAATGAGAAATTTTTATGGGTCTGTCTACAATAGTTAGG
GTTTATTTTCTGGCTTTTTTATTTTCTTTTCTGGTTTTGGTTTGCATCAA
TGTTTCTGCAAACAGCCCTATTTGCTTCCACCAGTTTGCTGGTGAGCAT
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