BQ623508

Overview
NameBQ623508
Unique NameBQ623508
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length649
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2169 contig Csv1_Contig2169:929..1577. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623508 vs. ExPASy Swiss-Prot
Match: EF1A2_RABIT (Elongation factor 1-alpha 2 OS=Oryctolagus cuniculus GN=EEF1A2 PE=1 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 3.158e-60
Identity = 100/137 (72.99%), Postives = 118/137 (86.13%), Query Frame = 2 
Query:   59 LAFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 469
            + FNVKNV+VKD++RG V  +SK DP +EAA FTSQVII+NHPGQI  GY+PV+DCHT+HIA KF+EL  KIDRRSGK+LE  PK LK+GDA +V+M+P KPM VE+FS YPPLGRFAVRDMRQTVAVGVIK+VEKK
Sbjct:  308 VGFNVKNVSVKDIRRGNVCGDSKSDPPQEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNVEKK 444

HSP 2 Score: 44.669 bits (104), Expect = 3.158e-60
Identity = 20/21 (95.24%), Postives = 20/21 (95.24%), Query Frame = 1 
Query:    1 VKSVEMHHEALQEALPGDNVG 63
            VKSVEMHHEAL EALPGDNVG
Sbjct:  289 VKSVEMHHEALSEALPGDNVG 309
[Close]
BLAST of BQ623508 vs. ExPASy Swiss-Prot
Match: EF1A2_HUMAN (Elongation factor 1-alpha 2 OS=Homo sapiens GN=EEF1A2 PE=1 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 3.158e-60
Identity = 100/137 (72.99%), Postives = 118/137 (86.13%), Query Frame = 2 
Query:   59 LAFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 469
            + FNVKNV+VKD++RG V  +SK DP +EAA FTSQVII+NHPGQI  GY+PV+DCHT+HIA KF+EL  KIDRRSGK+LE  PK LK+GDA +V+M+P KPM VE+FS YPPLGRFAVRDMRQTVAVGVIK+VEKK
Sbjct:  308 VGFNVKNVSVKDIRRGNVCGDSKSDPPQEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNVEKK 444

HSP 2 Score: 44.669 bits (104), Expect = 3.158e-60
Identity = 20/21 (95.24%), Postives = 20/21 (95.24%), Query Frame = 1 
Query:    1 VKSVEMHHEALQEALPGDNVG 63
            VKSVEMHHEAL EALPGDNVG
Sbjct:  289 VKSVEMHHEALSEALPGDNVG 309
[Close]
BLAST of BQ623508 vs. ExPASy Swiss-Prot
Match: EF1A2_BOVIN (Elongation factor 1-alpha 2 OS=Bos taurus GN=EEF1A2 PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 3.158e-60
Identity = 100/137 (72.99%), Postives = 118/137 (86.13%), Query Frame = 2 
Query:   59 LAFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 469
            + FNVKNV+VKD++RG V  +SK DP +EAA FTSQVII+NHPGQI  GY+PV+DCHT+HIA KF+EL  KIDRRSGK+LE  PK LK+GDA +V+M+P KPM VE+FS YPPLGRFAVRDMRQTVAVGVIK+VEKK
Sbjct:  308 VGFNVKNVSVKDIRRGNVCGDSKSDPPQEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNVEKK 444

HSP 2 Score: 44.669 bits (104), Expect = 3.158e-60
Identity = 20/21 (95.24%), Postives = 20/21 (95.24%), Query Frame = 1 
Query:    1 VKSVEMHHEALQEALPGDNVG 63
            VKSVEMHHEAL EALPGDNVG
Sbjct:  289 VKSVEMHHEALSEALPGDNVG 309
[Close]
BLAST of BQ623508 vs. ExPASy Swiss-Prot
Match: EF1A3_HUMAN (Putative elongation factor 1-alpha-like 3 OS=Homo sapiens GN=EEF1AL3 PE=5 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.158e-60
Identity = 101/137 (73.72%), Postives = 118/137 (86.13%), Query Frame = 2 
Query:   59 LAFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 469
            + F VKNV+VKD++RG VA +SK+DP  EAA FT+QVII+NHPGQI  GYAPVLDCH +HIA KF+EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  308 VGFKVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHMAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444

HSP 2 Score: 45.0542 bits (105), Expect = 3.158e-60
Identity = 20/23 (86.96%), Postives = 21/23 (91.30%), Query Frame = 1 
Query:    1 VKSVEMHHEALQEALPGDNVGLQ 69
            VKSVEMHHEAL EALPGDNVG +
Sbjct:  289 VKSVEMHHEALSEALPGDNVGFK 311
[Close]
BLAST of BQ623508 vs. ExPASy Swiss-Prot
Match: EF1A3_OSCTI (Elongation factor 1-alpha 3 OS=Oscheius tipulae GN=eft-3 PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 4.118e-60
Identity = 100/141 (70.92%), Postives = 121/141 (85.82%), Query Frame = 2 
Query:   59 LAFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 481
            + FNVKNV+VKD++RG V S+SK+DPA+E+ NFT+QVI+MNHPGQI  GY PVLDCHT+HIA KF+EL  K+DRR+GK  E  PKFLK+GDAG+V++IPTKP  VE+F+DY PLGRFAVRDMRQTVAVGVIKSV K D +G
Sbjct:  309 VGFNVKNVSVKDIRRGSVCSDSKNDPAKESKNFTAQVIVMNHPGQISAGYTPVLDCHTAHIACKFAELKEKVDRRTGKSTEASPKFLKSGDAGIVELIPTKPPCVESFTDYAPLGRFAVRDMRQTVAVGVIKSVTKDDGSG 449

HSP 2 Score: 40.817 bits (94), Expect = 4.118e-60
Identity = 18/21 (85.71%), Postives = 19/21 (90.48%), Query Frame = 1 
Query:    1 VKSVEMHHEALQEALPGDNVG 63
            VKSVEMHHE+L EA PGDNVG
Sbjct:  290 VKSVEMHHESLPEASPGDNVG 310
[Close]
BLAST of BQ623508 vs. ExPASy Swiss-Prot
Match: EF1A1_OSCTI (Elongation factor 1-alpha 1 OS=Oscheius tipulae GN=eft-1 PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 4.118e-60
Identity = 99/141 (70.21%), Postives = 123/141 (87.23%), Query Frame = 2 
Query:   59 LAFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 481
            + FNVKNV+VKD++RG V S+SK+DPA+E+ +FT+QVI+MNHPGQIG GY PVLDCHT+HIA KF+EL  K+DRR+GK++E  PKFLK+GDAG+V++IPTKP+ VE F+DY PLGRFAVRDMRQTVAVGVIK V K D +G
Sbjct:  308 VGFNVKNVSVKDIRRGSVCSDSKNDPAKESKSFTAQVIVMNHPGQIGAGYTPVLDCHTAHIACKFAELKEKVDRRTGKKVEDLPKFLKSGDAGIVELIPTKPLCVEAFTDYAPLGRFAVRDMRQTVAVGVIKGVTKDDGSG 448

HSP 2 Score: 40.817 bits (94), Expect = 4.118e-60
Identity = 18/21 (85.71%), Postives = 19/21 (90.48%), Query Frame = 1 
Query:    1 VKSVEMHHEALQEALPGDNVG 63
            VKSVEMHHE+L EA PGDNVG
Sbjct:  289 VKSVEMHHESLPEAQPGDNVG 309
[Close]
BLAST of BQ623508 vs. ExPASy Swiss-Prot
Match: EF1A3_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-3 PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 4.118e-60
Identity = 101/141 (71.63%), Postives = 124/141 (87.94%), Query Frame = 2 
Query:   59 LAFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 481
            + FNVKNV+VKD++RG V S+SK+DPA+E+A+FT+QVII+NHPGQI  GYAPVLDCHT+HIA KFSEL+ KIDRRS K +E  PKF+K+GD+ +VKM+P+KPM VE ++DYPPLGRFAVRDMRQTVAVGVIK+VEK D  G
Sbjct:  306 VGFNVKNVSVKDIRRGNVCSDSKNDPAKESASFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFSELIEKIDRRSEK-MEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVEKVDKAG 445

HSP 2 Score: 41.2022 bits (95), Expect = 4.118e-60
Identity = 18/21 (85.71%), Postives = 18/21 (85.71%), Query Frame = 1 
Query:    1 VKSVEMHHEALQEALPGDNVG 63
            VKSVEMHHE L E LPGDNVG
Sbjct:  287 VKSVEMHHETLTEGLPGDNVG 307
[Close]
BLAST of BQ623508 vs. ExPASy Swiss-Prot
Match: EF1A2_RAT (Elongation factor 1-alpha 2 OS=Rattus norvegicus GN=Eef1a2 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 5.369e-60
Identity = 100/137 (72.99%), Postives = 118/137 (86.13%), Query Frame = 2 
Query:   59 LAFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 469
            + FNVKNV+VKD++RG V  +SK DP +EAA FTSQVII+NHPGQI  GY+PV+DCHT+HIA KF+EL  KIDRRSGK+LE  PK LK+GDA +V+M+P KPM VE+FS YPPLGRFAVRDMRQTVAVGVIK+VEKK
Sbjct:  308 VGFNVKNVSVKDIRRGNVCGDSKADPPQEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNVEKK 444

HSP 2 Score: 44.669 bits (104), Expect = 5.369e-60
Identity = 20/21 (95.24%), Postives = 20/21 (95.24%), Query Frame = 1 
Query:    1 VKSVEMHHEALQEALPGDNVG 63
            VKSVEMHHEAL EALPGDNVG
Sbjct:  289 VKSVEMHHEALSEALPGDNVG 309
[Close]
BLAST of BQ623508 vs. ExPASy Swiss-Prot
Match: EF1A2_MOUSE (Elongation factor 1-alpha 2 OS=Mus musculus GN=Eef1a2 PE=1 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 5.369e-60
Identity = 100/137 (72.99%), Postives = 118/137 (86.13%), Query Frame = 2 
Query:   59 LAFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 469
            + FNVKNV+VKD++RG V  +SK DP +EAA FTSQVII+NHPGQI  GY+PV+DCHT+HIA KF+EL  KIDRRSGK+LE  PK LK+GDA +V+M+P KPM VE+FS YPPLGRFAVRDMRQTVAVGVIK+VEKK
Sbjct:  308 VGFNVKNVSVKDIRRGNVCGDSKADPPQEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNVEKK 444

HSP 2 Score: 44.669 bits (104), Expect = 5.369e-60
Identity = 20/21 (95.24%), Postives = 20/21 (95.24%), Query Frame = 1 
Query:    1 VKSVEMHHEALQEALPGDNVG 63
            VKSVEMHHEAL EALPGDNVG
Sbjct:  289 VKSVEMHHEALSEALPGDNVG 309
[Close]
BLAST of BQ623508 vs. ExPASy Swiss-Prot
Match: EF1A_AURPU (Elongation factor 1-alpha OS=Aureobasidium pullulans GN=TEF1 PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 9.127e-60
Identity = 98/141 (69.50%), Postives = 120/141 (85.11%), Query Frame = 2 
Query:   59 LAFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 481
            + FNVKNV+VK+++RG VA +SK+DP +   +F +QVI++NHPGQ+G GYAPVLDCHT+HIA KFSELV KIDRR+GK +E  PKF+K+GDA +VKM+P+KPM VE F+DYPPLGRFAVRDMRQTVAVGVIKSV K D  G
Sbjct:  305 VGFNVKNVSVKEIRRGNVAGDSKNDPPKGCDSFNAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFSELVEKIDRRTGKSVEAAPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKSVAKSDKQG 445

HSP 2 Score: 41.2022 bits (95), Expect = 9.127e-60
Identity = 18/21 (85.71%), Postives = 18/21 (85.71%), Query Frame = 1 
Query:    1 VKSVEMHHEALQEALPGDNVG 63
            VKSVEMHHE L E LPGDNVG
Sbjct:  286 VKSVEMHHEQLSEGLPGDNVG 306
The following BLAST results are available for this feature:
BLAST of BQ623508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
EF1A2_RABIT3.158e-6072.99Elongation factor 1-alpha 2 OS=Oryctolagus cunicul... [more]
EF1A2_HUMAN3.158e-6072.99Elongation factor 1-alpha 2 OS=Homo sapiens GN=EEF... [more]
EF1A2_BOVIN3.158e-6072.99Elongation factor 1-alpha 2 OS=Bos taurus GN=EEF1A... [more]
EF1A3_HUMAN3.158e-6073.72Putative elongation factor 1-alpha-like 3 OS=Homo ... [more]
EF1A3_OSCTI4.118e-6070.92Elongation factor 1-alpha 3 OS=Oscheius tipulae GN... [more]
EF1A1_OSCTI4.118e-6070.21Elongation factor 1-alpha 1 OS=Oscheius tipulae GN... [more]
EF1A3_RHIRA4.118e-6071.63Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]
EF1A2_RAT5.369e-6072.99Elongation factor 1-alpha 2 OS=Rattus norvegicus G... [more]
EF1A2_MOUSE5.369e-6072.99Elongation factor 1-alpha 2 OS=Mus musculus GN=Eef... [more]
EF1A_AURPU9.127e-6069.50Elongation factor 1-alpha OS=Aureobasidium pullula... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00599 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00599 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623508 ID=BQ623508; Name=BQ623508; organism=Citrus sinensis; type=EST; length=649bp
GTTAAGTCTGTTGAGATGCACCACGAAGCTCTGCAGGAGGCCCTTCCGGG
TGACAATGTTGGCCTTCAACGTGAAGAACGTTGCTGTCAAGGATCTCAAG
CGTGGTTTTGTTGCTTCCAACTCGAAGGATGATCCGGCCAGGGAAGCTGC
CAACTTCACTTCACAGGTCATCATCATGAACCATCCTGGCCAGATTGGAA
ATGGATATGCCCCAGTGCTTGACTGCCACACCTCCCACATTGCCGTCAAG
TTTTCTGAGCTCGTGACGAAGATTGATAGGCGATCAGGCAAGGAGCTTGA
GAAGGAGCCCAAGTTCTTGAAGAATGGAGATGCCGGAATGGTTAAGATGA
TTCCCACCAAGCCCATGGTTGTTGAGACATTCTCCGACTACCCACCCCTT
GGTCGTTTTGCTGTTAGGGACATGCGTCAGACTGTTGCTGTGGGTGTTAT
CAAGAGTGTTGAGAAGAAGGATCCCACAGGTGCCAAGGTCACCAAGTCCG
CAGCCAAGAAGAAATGAGAAATTTTTATGGGTCTGTCTACAATAGTTAGG
GTTTATTTTCTGGCTTTTTTATTTTCTTTTCTGGTTTTGGTTTGCATCAA
TGTTTCTGCAAACAGCCCTATTTGCTTCCACCAGTTTGCTGGTGAGCAT
back to top