BQ623511

Overview
NameBQ623511
Unique NameBQ623511
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length675
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of BQ623511 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 319.316 bits (817), Expect = 3.297e-93
Identity = 155/184 (84.24%), Postives = 164/184 (89.13%), Query Frame = 1 
Query:   64 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 615
            AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:   72 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 255

HSP 2 Score: 44.2838 bits (103), Expect = 3.297e-93
Identity = 18/27 (66.67%), Postives = 20/27 (74.07%), Query Frame = 3 
Query:    3 SEQTPSYLTGEFPGDYGWDTCWFISRP 83
            S + PSYLTGEFPGDYGWDT    + P
Sbjct:   52 SGEPPSYLTGEFPGDYGWDTAGLSADP 78
[Close]
BLAST of BQ623511 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 318.546 bits (815), Expect = 5.610e-93
Identity = 156/183 (85.25%), Postives = 163/183 (89.07%), Query Frame = 1 
Query:   64 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPG 612
            AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWACQVVLMG VEGYRI                +FDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHIADPV NNAWAYATNFVPG
Sbjct:   79 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPG 261

HSP 2 Score: 44.2838 bits (103), Expect = 5.610e-93
Identity = 18/27 (66.67%), Postives = 20/27 (74.07%), Query Frame = 3 
Query:    3 SEQTPSYLTGEFPGDYGWDTCWFISRP 83
            S + PSYLTGEFPGDYGWDT    + P
Sbjct:   59 SGEPPSYLTGEFPGDYGWDTAGLSADP 85
[Close]
BLAST of BQ623511 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 317.005 bits (811), Expect = 1.628e-92
Identity = 154/184 (83.70%), Postives = 163/184 (88.59%), Query Frame = 1 
Query:   64 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 615
            AGLSADPETFAKNRELEVIHS WAMLGALGCVFPE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:   23 AGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 206

HSP 2 Score: 44.2838 bits (103), Expect = 1.628e-92
Identity = 18/27 (66.67%), Postives = 20/27 (74.07%), Query Frame = 3 
Query:    3 SEQTPSYLTGEFPGDYGWDTCWFISRP 83
            S + PSYLTGEFPGDYGWDT    + P
Sbjct:    3 SGEPPSYLTGEFPGDYGWDTAGLSADP 29
[Close]
BLAST of BQ623511 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 316.62 bits (810), Expect = 2.119e-92
Identity = 153/184 (83.15%), Postives = 162/184 (88.04%), Query Frame = 1 
Query:   64 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 615
            AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLG+P LIHAQSILAIWACQV+LMG +EGYR+                 FDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL DH+ADPV NNAWAYATNFVPGK
Sbjct:   95 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278

HSP 2 Score: 44.2838 bits (103), Expect = 2.119e-92
Identity = 18/27 (66.67%), Postives = 20/27 (74.07%), Query Frame = 3 
Query:    3 SEQTPSYLTGEFPGDYGWDTCWFISRP 83
            S + PSYLTGEFPGDYGWDT    + P
Sbjct:   75 SGEPPSYLTGEFPGDYGWDTAGLSADP 101
[Close]
BLAST of BQ623511 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 315.079 bits (806), Expect = 6.138e-92
Identity = 151/184 (82.07%), Postives = 163/184 (88.59%), Query Frame = 1 
Query:   64 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 615
            AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWACQVVLMG +EGYR+                 FDPLGLADDP+ FA++KVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:   82 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVVDPLYPGGTFDPLGLADDPEAFADVKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265

HSP 2 Score: 44.2838 bits (103), Expect = 6.138e-92
Identity = 18/27 (66.67%), Postives = 20/27 (74.07%), Query Frame = 3 
Query:    3 SEQTPSYLTGEFPGDYGWDTCWFISRP 83
            S + PSYLTGEFPGDYGWDT    + P
Sbjct:   62 SGEPPSYLTGEFPGDYGWDTAGLSADP 88
[Close]
BLAST of BQ623511 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 315.079 bits (806), Expect = 6.138e-92
Identity = 154/184 (83.70%), Postives = 163/184 (88.59%), Query Frame = 1 
Query:   64 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 615
            AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA QVVLMG VEGYRI                AFDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:   82 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265

HSP 2 Score: 44.2838 bits (103), Expect = 6.138e-92
Identity = 18/27 (66.67%), Postives = 20/27 (74.07%), Query Frame = 3 
Query:    3 SEQTPSYLTGEFPGDYGWDTCWFISRP 83
            S + PSYLTGEFPGDYGWDT    + P
Sbjct:   62 SGEPPSYLTGEFPGDYGWDTAGLSADP 88
[Close]
BLAST of BQ623511 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 8.007e-92
Identity = 151/184 (82.07%), Postives = 163/184 (88.59%), Query Frame = 1 
Query:   64 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 615
            AGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:   84 AGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 267

HSP 2 Score: 45.0542 bits (105), Expect = 8.007e-92
Identity = 18/27 (66.67%), Postives = 21/27 (77.78%), Query Frame = 3 
Query:    3 SEQTPSYLTGEFPGDYGWDTCWFISRP 83
            S ++PSYLTGEFPGDYGWDT    + P
Sbjct:   64 SGESPSYLTGEFPGDYGWDTAGLSADP 90
[Close]
BLAST of BQ623511 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 314.309 bits (804), Expect = 1.044e-91
Identity = 151/184 (82.07%), Postives = 162/184 (88.04%), Query Frame = 1 
Query:   64 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 615
            AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLG+P LIHAQSILAIWACQV+LMG +EGYR+                 FDPLGLADDPD FA++KVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL DH+ADPV NNAWAYATNFVPGK
Sbjct:   95 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFADVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278

HSP 2 Score: 44.2838 bits (103), Expect = 1.044e-91
Identity = 18/27 (66.67%), Postives = 20/27 (74.07%), Query Frame = 3 
Query:    3 SEQTPSYLTGEFPGDYGWDTCWFISRP 83
            S + PSYLTGEFPGDYGWDT    + P
Sbjct:   75 SGEPPSYLTGEFPGDYGWDTAGLSADP 101
[Close]
BLAST of BQ623511 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 1.045e-91
Identity = 149/184 (80.98%), Postives = 163/184 (88.59%), Query Frame = 1 
Query:   64 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 615
            AGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG +EGYR+                +FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP++NL DH+ADPV NNAWAYATNFVPGK
Sbjct:   84 AGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVNNNAWAYATNFVPGK 267

HSP 2 Score: 44.669 bits (104), Expect = 1.045e-91
Identity = 18/27 (66.67%), Postives = 20/27 (74.07%), Query Frame = 3 
Query:    3 SEQTPSYLTGEFPGDYGWDTCWFISRP 83
            S + PSYLTGEFPGDYGWDT    + P
Sbjct:   64 SGEAPSYLTGEFPGDYGWDTAGLSADP 90
[Close]
BLAST of BQ623511 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 1.045e-91
Identity = 150/184 (81.52%), Postives = 163/184 (88.59%), Query Frame = 1 
Query:   64 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 615
            AGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:   84 AGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267

HSP 2 Score: 45.0542 bits (105), Expect = 1.045e-91
Identity = 18/27 (66.67%), Postives = 21/27 (77.78%), Query Frame = 3 
Query:    3 SEQTPSYLTGEFPGDYGWDTCWFISRP 83
            S ++PSYLTGEFPGDYGWDT    + P
Sbjct:   64 SGESPSYLTGEFPGDYGWDTAGLSADP 90
The following BLAST results are available for this feature:
BLAST of BQ623511 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
CB21_CUCSA3.297e-9384.24Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_MAIZE5.610e-9385.25Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB22_CUCSA1.628e-9283.70Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB2A_PINSY2.119e-9283.15Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB29_MAIZE6.138e-9282.07Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB21_ORYSJ6.138e-9283.70Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2G_SOLLC8.007e-9282.07Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB2A_PYRPY1.044e-9182.07Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB27_TOBAC1.045e-9180.98Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB24_TOBAC1.045e-9181.52Chlorophyll a-b binding protein 40, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00602 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00602 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623511 ID=BQ623511; Name=BQ623511; organism=Citrus sinensis; type=EST; length=675bp
GCTCTGAGCAAACACCATCATACTTGACTGGTGAGTTCCCTGGTGACTAT
GGCTGGGATACCTGCTGGTTTATCAGCAGACCCCGAGACATTTGCTAAGA
ACCGTGAGCTAGAGGTGATCCACAGCAGATGGGCAATGCTTGGAGCTCTT
GGCTGCGTCTTCCCTGAAATCCTCTCCAAGAATGGAGTGAAGTTCGGCGA
AGCAGTTTGGTTCAAGGCTGGCGCTCAAATCTTCTCTGAAGGTGGCCTTG
ACTATCTTGGCAACCCCAACCTCATTCATGCTCAGAGCATTTTGGCTATC
TGGGCCTGCCAGGTTGTGCTCATGGGTTTTGTTGAAGGATACAGAATTGG
TGGCGGTCCTCTTGGTGAAGGACTTGACCCACTTTACCCTGGTGGTGCTT
TTGACCCACTTGGTTTGGCTGATGACCCCGATCAATTTGCTGAGTTGAAG
GTCAAGGAGCTCAAGAATGGCCGTCTGGCTATGTTCTCCATGTTTGGATT
CTTTGTTCAGGCTATTGTCACTGGGAAGGGTCCAATTGAGAACCTCTACG
ACCACATTGCTGATCCTGTGGCCAACAATGCCTGGGCTTATGCCACTAAC
TTTGTTCCCGGAAAGTGAAGAAACTATGACTTGATGGTGGCTGGTTCATC
TGTAACATTATTCTATCATCGGATG
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