BQ623512

Overview
NameBQ623512
Unique NameBQ623512
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length522
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623512_ssr332 microsatellite BQ623512_ssr332:332..346. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8154 contig Csv1_Contig8154:655..1176. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623512 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 7.295e-17
Identity = 46/90 (51.11%), Postives = 62/90 (68.89%), Query Frame = 2
Query:    2 EVLVIGYIEFQRNSELDP----EKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 259
            +V+++G +E  R +   P    E  LYPGG F DPLGLA DPE  A L++ E+K+ RLAM +  GF VQA+VTGKGP+ N A HL+DP++
Sbjct:  165 QVILMGAVEGYRVAGNGPLGEAEDLLYPGGSF-DPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVN 253          
BLAST of BQ623512 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 7.295e-17
Identity = 46/90 (51.11%), Postives = 62/90 (68.89%), Query Frame = 2
Query:    2 EVLVIGYIEFQRNSELDP----EKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 259
            +V+++G +E  R +   P    E  LYPGG F DPLGLA DPE  A L++ E+K+ RLAM +  GF VQA+VTGKGP+ N A HL+DP++
Sbjct:  165 QVILMGAVEGYRVAGNGPLGEAEDLLYPGGSF-DPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVN 253          
BLAST of BQ623512 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.244e-16
Identity = 48/92 (52.17%), Postives = 62/92 (67.39%), Query Frame = 2
Query:    2 EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 259
            +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ E+K+ RLAM +  GF VQA+VTGKGPL N A HLSDP++
Sbjct:  167 QVILMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVN 254          
BLAST of BQ623512 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.244e-16
Identity = 48/92 (52.17%), Postives = 62/92 (67.39%), Query Frame = 2
Query:    2 EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 259
            +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  166 QVVLMGAVEGYRVAGGPLGEVIDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 253          
BLAST of BQ623512 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.244e-16
Identity = 48/92 (52.17%), Postives = 62/92 (67.39%), Query Frame = 2
Query:    2 EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 259
            +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  164 QVILMGAVEGYRVAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 251          
BLAST of BQ623512 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.244e-16
Identity = 48/92 (52.17%), Postives = 62/92 (67.39%), Query Frame = 2
Query:    2 EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 259
            +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  165 QVVLMGAVEGYRVAGGPLGEVIDP---LYPGGSF-DPLGLADDPEAFAELEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 252          
BLAST of BQ623512 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.625e-16
Identity = 48/92 (52.17%), Postives = 62/92 (67.39%), Query Frame = 2
Query:    2 EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 259
            +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:   15 QVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 102          
BLAST of BQ623512 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.625e-16
Identity = 48/92 (52.17%), Postives = 62/92 (67.39%), Query Frame = 2
Query:    2 EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 259
            +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  164 QVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 251          
BLAST of BQ623512 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.625e-16
Identity = 48/92 (52.17%), Postives = 62/92 (67.39%), Query Frame = 2
Query:    2 EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 259
            +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  164 QVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 251          
BLAST of BQ623512 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.625e-16
Identity = 48/92 (52.17%), Postives = 62/92 (67.39%), Query Frame = 2
Query:    2 EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 259
            +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  166 QVILMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 253          
The following BLAST results are available for this feature:
BLAST of BQ623512 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
CB22_ARATH7.295e-1751.11Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH7.295e-1751.11Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB28_PEA1.244e-1652.17Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PETSP1.244e-1652.17Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB22_TOBAC1.244e-1652.17Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB21_PETSP1.244e-1652.17Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB2D_SOLLC1.625e-1652.17Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC1.625e-1652.17Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2B_SOLLC1.625e-1652.17Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB2A_SPIOL1.625e-1652.17Chlorophyll a-b binding protein, chloroplastic OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00603 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00603 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623512 ID=BQ623512; Name=BQ623512; organism=Citrus sinensis; type=EST; length=522bp
TGAGGTTTTGGTAATTGGCTACATTGAGTTCCAAAGAAACTCAGAGCTTG
ACCCGGAGAAGAGACTCTACCCGGGAGGAAAGTTTTTTGATCCTCTGGGC
TTGGCCGCTGACCCGGAAAAGAAAGCCACCCTTCAATTGGCAGAGATCAA
GCACGCCCGCCTTGCCATGGTTGCATTCCTTGGCTTCGCTGTCCAAGCTG
TTGTCACCGGAAAAGGCCCTCTCAACAACTGGGCTACCCACTTGAGCGAT
CCTCTTCACACAACCATTCTTGACACCTTCATCTCTTAGATTTCTGGTGT
AGCCTCCAGTACTTGGCAGTTGGCACTATTGTTATTATTATTATTATATG
CGCCTATCTTGTAAAAAGAATTATAACATTTGACAGCTTAAGGGGAATGC
TATGGCTTCATATTTTGAAGTCATTTCATCTTTGCGTAACAAAAAAGAAA
ATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAACTTT
back to top