BQ623512 | Citrus Genome Database

Overview


Name	BQ623512
Unique Name	BQ623512
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	522

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
BQ623512_ssr332	microsatellite	BQ623512_ssr332:332..346.	BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8154	contig	Csv1_Contig8154:655..1176.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of BQ623512 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.625e-16
Identity = 48/92 (52.17%), Postives = 62/92 (67.39%), Query Frame = 2

Query:    2 EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 259
            +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  164 QVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 251

[Close]

BLAST of BQ623512 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.625e-16
Identity = 48/92 (52.17%), Postives = 62/92 (67.39%), Query Frame = 2

Query:    2 EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 259
            +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  166 QVVLMGAVEGYRVAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 253

[Close]

BLAST of BQ623512 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.625e-16
Identity = 48/92 (52.17%), Postives = 62/92 (67.39%), Query Frame = 2

Query:    2 EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 259
            +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  165 QVVLMGAVEGYRVAGGPLGEVIDP---LYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 252

[Close]

BLAST of BQ623512 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.625e-16
Identity = 48/92 (52.17%), Postives = 62/92 (67.39%), Query Frame = 2

Query:    2 EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 259
            +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  166 QVVLMGAVEGYRVAGEPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 253

[Close]

BLAST of BQ623512 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.625e-16
Identity = 48/92 (52.17%), Postives = 62/92 (67.39%), Query Frame = 2

Query:    2 EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 259
            +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  165 QVVLMGAVEGYRVAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 252

[Close]

BLAST of BQ623512 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.123e-16
Identity = 48/92 (52.17%), Postives = 62/92 (67.39%), Query Frame = 2

Query:    2 EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 259
            +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  166 QVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 253

[Close]

BLAST of BQ623512 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.123e-16
Identity = 48/92 (52.17%), Postives = 62/92 (67.39%), Query Frame = 2

Query:    2 EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 259
            +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  166 QVVLMGAVEGYRVAGGPLGEVVDP---LYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 253

[Close]

BLAST of BQ623512 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 2.123e-16
Identity = 48/92 (52.17%), Postives = 62/92 (67.39%), Query Frame = 2

Query:    2 EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 259
            +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  160 QVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 247

[Close]

BLAST of BQ623512 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.772e-16
Identity = 47/92 (51.09%), Postives = 62/92 (67.39%), Query Frame = 2

Query:    2 EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 259
            +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A H++DP++
Sbjct:  166 QVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVN 253

[Close]

BLAST of BQ623512 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.772e-16
Identity = 47/92 (51.09%), Postives = 62/92 (67.39%), Query Frame = 2

Query:    2 EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 259
            +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A H++DP++
Sbjct:  166 QVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVN 253

The following BLAST results are available for this feature:

BLAST of BQ623512 vs. ExPASy Swiss-Prot

BLAST of BQ623512 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77


Match Name	E-value	Identity	Description
CB2A_SOLLC	1.625e-16	52.17	Chlorophyll a-b binding protein 1A, chloroplastic ...	[more]
CB24_TOBAC	1.625e-16	52.17	Chlorophyll a-b binding protein 40, chloroplastic ...	[more]
CB24_PETSP	1.625e-16	52.17	Chlorophyll a-b binding protein 25, chloroplastic ...	[more]
CB23_NICPL	1.625e-16	52.17	Chlorophyll a-b binding protein C, chloroplastic O...	[more]
CB21_TOBAC	1.625e-16	52.17	Chlorophyll a-b binding protein 16, chloroplastic ...	[more]
CB2G_SOLLC	2.123e-16	52.17	Chlorophyll a-b binding protein 3C, chloroplastic ...	[more]
CB25_PETSP	2.123e-16	52.17	Chlorophyll a-b binding protein 91R, chloroplastic...	[more]
CB22_ORYSJ	2.123e-16	52.17	Chlorophyll a-b binding protein 2, chloroplastic O...	[more]
CB2F_SOLLC	2.772e-16	51.09	Chlorophyll a-b binding protein 3B, chloroplastic ...	[more]
CB2E_SOLLC	2.772e-16	51.09	Chlorophyll a-b binding protein 3A, chloroplastic ...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_00603 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00603 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>BQ623512 ID=BQ623512; Name=BQ623512; organism=Citrus sinensis; type=EST; length=522bp
TGAGGTTTTGGTAATTGGCTACATTGAGTTCCAAAGAAACTCAGAGCTTG
ACCCGGAGAAGAGACTCTACCCGGGAGGAAAGTTTTTTGATCCTCTGGGC
TTGGCCGCTGACCCGGAAAAGAAAGCCACCCTTCAATTGGCAGAGATCAA
GCACGCCCGCCTTGCCATGGTTGCATTCCTTGGCTTCGCTGTCCAAGCTG
TTGTCACCGGAAAAGGCCCTCTCAACAACTGGGCTACCCACTTGAGCGAT
CCTCTTCACACAACCATTCTTGACACCTTCATCTCTTAGATTTCTGGTGT
AGCCTCCAGTACTTGGCAGTTGGCACTATTGTTATTATTATTATTATATG
CGCCTATCTTGTAAAAAGAATTATAACATTTGACAGCTTAAGGGGAATGC
TATGGCTTCATATTTTGAAGTCATTTCATCTTTGCGTAACAAAAAAGAAA
ATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAACTTT