BQ623512

Overview
NameBQ623512
Unique NameBQ623512
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length522
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623512_ssr332 microsatellite BQ623512_ssr332:332..346. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8154 contig Csv1_Contig8154:655..1176. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623512 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.176e-16
Identity = 48/91 (52.75%), Postives = 60/91 (65.93%), Query Frame = 2
Query:    2 EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 256
            +V+++G IE  R         LDP   LYPG  F DPLGLA DPE KA L++ EIK+ RLAM +  GF VQA+VTGKGP+ N   HL+DP+
Sbjct:   49 QVVLMGLIEGYRVGGGPLGEGLDP---LYPGDAF-DPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPV 135          
BLAST of BQ623512 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.176e-16
Identity = 46/92 (50.00%), Postives = 62/92 (67.39%), Query Frame = 2
Query:    2 EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 259
            +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ E+K+ RLAM +  GF VQA+VTGKGPL N A H++DP++
Sbjct:  161 QVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVN 248          
BLAST of BQ623512 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 8.066e-16
Identity = 47/92 (51.09%), Postives = 62/92 (67.39%), Query Frame = 2
Query:    2 EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 259
            +V+++G IE  R         +DP   LYPGG F DPLGLA DPE  A +++ E+K+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  164 QVVLMGAIEGYRVAGGPLGEVVDP---LYPGGTF-DPLGLADDPEAFADVKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 251          
BLAST of BQ623512 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.053e-15
Identity = 46/92 (50.00%), Postives = 61/92 (66.30%), Query Frame = 2
Query:    2 EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 259
            +V+++G +E  R          DP   +YPGG F DPLGLA DPE  A L++ E+K+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  105 QVVLMGAVEGYRIAGGPLGEVTDP---IYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 192          
BLAST of BQ623512 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.053e-15
Identity = 46/92 (50.00%), Postives = 61/92 (66.30%), Query Frame = 2
Query:    2 EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 259
            +V+++G +E  R          DP   +YPGG F DPLGLA DPE  A L++ E+K+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  154 QVVLMGAVEGYRIAGGPLGEVTDP---IYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 241          
BLAST of BQ623512 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.376e-15
Identity = 46/92 (50.00%), Postives = 61/92 (66.30%), Query Frame = 2
Query:    2 EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 259
            +V+++G IE  R          DP   +YPGG F DPLGLA DP+  A L++ EIK+ RLAM +  GF VQA+VTGKGP+ N A HL+DP++
Sbjct:  177 QVILMGAIEGYRVAGGPLGEVTDP---IYPGGNF-DPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVN 264          
BLAST of BQ623512 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.376e-15
Identity = 47/92 (51.09%), Postives = 61/92 (66.30%), Query Frame = 2
Query:    2 EVLVIGYIEFQRNSE------LDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 259
            +VL++G +E  R +       +DP   LYPGG F DPLGLA DPE  A L++ E K+ RLAM +  GF +QA+VTGKGPL N A HL DP++
Sbjct:  166 QVLLMGAVEGYRVAGGPLGVVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDPVN 253          
BLAST of BQ623512 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.376e-15
Identity = 45/91 (49.45%), Postives = 61/91 (67.03%), Query Frame = 2
Query:    2 EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 256
            +V+++G++E  R         LDP   +YPGG F DPLGLA DP+  A L++ EIK+ RLAM +  GF VQA+VTGKGP+ N   HL+DP+
Sbjct:  164 QVVLMGFVEGYRVGGGPLGEGLDP---IYPGGAF-DPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPV 250          
BLAST of BQ623512 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.797e-15
Identity = 48/89 (53.93%), Postives = 60/89 (67.42%), Query Frame = 2
Query:    2 EVLVIGYIEFQR---NSE--LDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDP 253
            +V+++G  E  R    SE  LD    LYPGG F DPLGLA DP+  A L++ EIK+ RLAM + LGF VQA+VTGKGP+ N   HL+DP
Sbjct:  150 QVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPF-DPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADP 237          
BLAST of BQ623512 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.797e-15
Identity = 44/91 (48.35%), Postives = 62/91 (68.13%), Query Frame = 2
Query:    2 EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 256
            +V+++G++E  R         LD   ++YPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGP+ N + H++DP+
Sbjct:  136 QVVLMGFVEGYRVGGGPLGEGLD---KIYPGGAF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPV 222          
The following BLAST results are available for this feature:
BLAST of BQ623512 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
CB22_PINSY6.176e-1652.75Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB21_MAIZE6.176e-1650.00Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB29_MAIZE8.066e-1651.09Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB22_CUCSA1.053e-1550.00Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB21_CUCSA1.053e-1550.00Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2A_PINSY1.376e-1550.00Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB22_PETSP1.376e-1551.09Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB21_GOSHI1.376e-1549.45Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB2_DUNTE1.797e-1553.93Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB25_SOLLC1.797e-1548.35Chlorophyll a-b binding protein 5, chloroplastic (... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00603 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00603 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623512 ID=BQ623512; Name=BQ623512; organism=Citrus sinensis; type=EST; length=522bp
TGAGGTTTTGGTAATTGGCTACATTGAGTTCCAAAGAAACTCAGAGCTTG
ACCCGGAGAAGAGACTCTACCCGGGAGGAAAGTTTTTTGATCCTCTGGGC
TTGGCCGCTGACCCGGAAAAGAAAGCCACCCTTCAATTGGCAGAGATCAA
GCACGCCCGCCTTGCCATGGTTGCATTCCTTGGCTTCGCTGTCCAAGCTG
TTGTCACCGGAAAAGGCCCTCTCAACAACTGGGCTACCCACTTGAGCGAT
CCTCTTCACACAACCATTCTTGACACCTTCATCTCTTAGATTTCTGGTGT
AGCCTCCAGTACTTGGCAGTTGGCACTATTGTTATTATTATTATTATATG
CGCCTATCTTGTAAAAAGAATTATAACATTTGACAGCTTAAGGGGAATGC
TATGGCTTCATATTTTGAAGTCATTTCATCTTTGCGTAACAAAAAAGAAA
ATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAACTTT
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