BQ623512

Overview
NameBQ623512
Unique NameBQ623512
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length522
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623512_ssr332 microsatellite BQ623512_ssr332:332..346. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8154 contig Csv1_Contig8154:655..1176. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623512 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 6.828e-15
Identity = 45/92 (48.91%), Postives = 60/92 (65.22%), Query Frame = 2
Query:    2 EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 259
            +V+++G +E  R          DP   +YPGG F DPL LA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL++P++
Sbjct:  144 QVILMGAVEGYRIAGGPLGEVTDP---IYPGGSF-DPLALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVN 231          
BLAST of BQ623512 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 6.828e-15
Identity = 47/91 (51.65%), Postives = 59/91 (64.84%), Query Frame = 2
Query:    2 EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 256
            +V+++G IE  R         LDP   L PGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGP+ N   HL+DP+
Sbjct:  165 QVVLMGLIEGYRVGGGTLGEGLDP---LLPGGAF-DPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPV 251          
BLAST of BQ623512 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.918e-15
Identity = 45/91 (49.45%), Postives = 59/91 (64.84%), Query Frame = 2
Query:    2 EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 256
            +V+++G +E  R          DP   +YPGG F DPLGLA DP+  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N   HL+DP+
Sbjct:  167 QVVLMGAVEGYRVAGGPLGEVTDP---IYPGGSF-DPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPV 253          
BLAST of BQ623512 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.918e-15
Identity = 46/90 (51.11%), Postives = 60/90 (66.67%), Query Frame = 2
Query:    2 EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDP 253
            +V+++G +E  R         LDP   LYPG + FDPLGLA DP+  A L++ EIK+ RLAM A LGF VQA+VTGKGP+ N   HL++P
Sbjct:  173 QVVLMGLVEGYRVNGGPAGEGLDP---LYPG-EAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANP 258          
BLAST of BQ623512 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.165e-14
Identity = 45/91 (49.45%), Postives = 60/91 (65.93%), Query Frame = 2
Query:    2 EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 256
            +V+++G IE  R         LD   ++YPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGP+ N   H++DP+
Sbjct:  164 QVVLMGLIEGYRVGGGPLGEGLD---KIYPGGAF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPV 250          
BLAST of BQ623512 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.165e-14
Identity = 45/92 (48.91%), Postives = 60/92 (65.22%), Query Frame = 2
Query:    2 EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 259
            +V+++G +E  R         +DP   LYPGG F DPLGLA  PE  A L++ E+K+ RLAM +  GF V A+VTGKGPL N A HL+DP++
Sbjct:  127 QVILMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLAEVPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENLADHLADPVN 214          
BLAST of BQ623512 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.521e-14
Identity = 39/65 (60.00%), Postives = 49/65 (75.38%), Query Frame = 2
Query:   65 LYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 259
            LY GG F DPLGL  DPE+ A L++ EIK+ RLAM +  GF VQA+VTGKGP+ N A HL+DP++
Sbjct:  187 LYLGGSF-DPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVN 250          
BLAST of BQ623512 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.595e-14
Identity = 42/91 (46.15%), Postives = 61/91 (67.03%), Query Frame = 2
Query:    2 EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 256
            +V+++G++E  R         LD   ++YPGG F DPLGLA DP+  A L++ E+K+ RLAM +  GF VQA+VTGKGP+ N   H++DP+
Sbjct:  162 QVVLMGFVEGYRVGGGPLGEGLD---KVYPGGAF-DPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPV 248          
BLAST of BQ623512 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.595e-14
Identity = 42/91 (46.15%), Postives = 61/91 (67.03%), Query Frame = 2
Query:    2 EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 256
            +V+++G++E  R         LD   ++YPGG F DPLGLA DP+  A L++ E+K+ RLAM +  GF VQA+VTGKGP+ N   H++DP+
Sbjct:  162 QVVLMGFVEGYRVGGGPLGEGLD---KVYPGGAF-DPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPV 248          
BLAST of BQ623512 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.595e-14
Identity = 44/92 (47.83%), Postives = 61/92 (66.30%), Query Frame = 2
Query:    2 EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 259
            +V+++G +E  R         +DP   LYPGG F DPLGLA  P+  A L++ EIK+ RLAM +  GF VQA+VTGKGPL + A H++DP++
Sbjct:  165 QVVLMGAVEGYRIAGGPLGEIVDP---LYPGGSF-DPLGLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVN 252          
The following BLAST results are available for this feature:
BLAST of BQ623512 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
CB21_SOYBN6.828e-1548.91Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_PINTH6.828e-1551.65Chlorophyll a-b binding protein type I, chloroplas... [more]
CB2_PHYPA8.918e-1549.45Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2_DUNSA8.918e-1551.11Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_TOBAC1.165e-1449.45Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB21_PEA1.165e-1448.91Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB48_MAIZE1.521e-1460.00Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB23_ORYSJ2.595e-1446.15Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI2.595e-1446.15Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_WHEAT2.595e-1447.83Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00603 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00603 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623512 ID=BQ623512; Name=BQ623512; organism=Citrus sinensis; type=EST; length=522bp
TGAGGTTTTGGTAATTGGCTACATTGAGTTCCAAAGAAACTCAGAGCTTG
ACCCGGAGAAGAGACTCTACCCGGGAGGAAAGTTTTTTGATCCTCTGGGC
TTGGCCGCTGACCCGGAAAAGAAAGCCACCCTTCAATTGGCAGAGATCAA
GCACGCCCGCCTTGCCATGGTTGCATTCCTTGGCTTCGCTGTCCAAGCTG
TTGTCACCGGAAAAGGCCCTCTCAACAACTGGGCTACCCACTTGAGCGAT
CCTCTTCACACAACCATTCTTGACACCTTCATCTCTTAGATTTCTGGTGT
AGCCTCCAGTACTTGGCAGTTGGCACTATTGTTATTATTATTATTATATG
CGCCTATCTTGTAAAAAGAATTATAACATTTGACAGCTTAAGGGGAATGC
TATGGCTTCATATTTTGAAGTCATTTCATCTTTGCGTAACAAAAAAGAAA
ATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAACTTT
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