BQ623520

Overview
NameBQ623520
Unique NameBQ623520
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13682 contig Csv1_Contig13682:68..749. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of BQ623520 vs. ExPASy Swiss-Prot
Match: PUR6_VIBVY (Phosphoribosylaminoimidazole carboxylase catalytic subunit OS=Vibrio vulnificus (strain YJ016) GN=purE PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 38/80 (47.50%), Postives = 48/80 (60.00%), Query Frame = 2 
Query:  308 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDRVEAHLSGVAAANSQILVI 547
            VGIIM S  D P M  AA  L  FGV YE K++  H+       YA +AKERG+K+II G    AHL G+AAA + + V+
Sbjct:    3 VGIIMGSKSDWPTMKLAAEMLDRFGVEYETKVVSAHRTPHLLAEYASTAKERGLKVIIAGAGGAAHLPGMAAAFTSLPVL 82
[Close]
BLAST of BQ623520 vs. ExPASy Swiss-Prot
Match: PUR6_VIBVU (Phosphoribosylaminoimidazole carboxylase catalytic subunit OS=Vibrio vulnificus GN=purE PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 38/80 (47.50%), Postives = 48/80 (60.00%), Query Frame = 2 
Query:  308 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDRVEAHLSGVAAANSQILVI 547
            VGIIM S  D P M  AA  L  FGV YE K++  H+       YA +AKERG+K+II G    AHL G+AAA + + V+
Sbjct:    3 VGIIMGSKSDWPTMKLAAEMLDRFGVEYETKVVSAHRTPHLLAEYASTAKERGLKVIIAGAGGAAHLPGMAAAFTSLPVL 82
[Close]
BLAST of BQ623520 vs. ExPASy Swiss-Prot
Match: PUR6_VIBCH (Phosphoribosylaminoimidazole carboxylase catalytic subunit OS=Vibrio cholerae GN=purE PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 37/80 (46.25%), Postives = 47/80 (58.75%), Query Frame = 2 
Query:  308 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDRVEAHLSGVAAANSQILVI 547
            VGIIM S  D P M  AA  L  FGV YE K++  H+       YA SAKERG+++II G    AHL G+ AA + + V+
Sbjct:    3 VGIIMGSKSDWPTMKHAAEMLDQFGVAYETKVVSAHRTPHLLADYASSAKERGLQVIIAGAGGAAHLPGMTAAFTSLPVL 82
The following BLAST results are available for this feature:
BLAST of BQ623520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
PUR6_VIBVY6.144e-1147.50Phosphoribosylaminoimidazole carboxylase catalytic... [more]
PUR6_VIBVU6.144e-1147.50Phosphoribosylaminoimidazole carboxylase catalytic... [more]
PUR6_VIBCH6.144e-1146.25Phosphoribosylaminoimidazole carboxylase catalytic... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00611 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00611 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623520 ID=BQ623520; Name=BQ623520; organism=Citrus sinensis; type=EST; length=683bp
GGCGGTGCTCACAATGAAGACCATTACCATTGATCTGCGAGTGCTATTTT
GTGTACTCAACAAGGTCATCGTTACTTCTTGCTTAATAGAACCGCGGCAA
AAAAAATTTGTTGAAGGAAAAGTTCGGATGTTCAATAACAGCAAGCGTCC
CAATTCGGTTCGTACTGTAAGCCGGGGCACAATTCCTGTTTTAGCCTCGT
CGAACGGCTCTGCTACTTCCAGAAGGAAGGATGATTCATCTGTCCGTGAA
CCATCAACTGTCTTCGAGGAAGAAAACCCTAATGGTGACTCTACAGATGC
CCCAATTGTTGGGATAATCATGGAATCGGATTTGGATCTTCCTGTTATGA
ATGATGCTGCGAGGACCTTGAGTGACTTCGGCGTACCTTATGAGATTAAA
ATATTACCACCTCATCAAAATTGCAAGGAGGCATTGTCTTATGCATTGTC
GGCTAAGGAGCGAGGCATTAAGATCATTATTGTTGGTGACCGTGTTGAAG
CCCATTTATCAGGTGTAGCTGCTGCAAATTCTCAAATACTTGTTATTTCG
TGTTCCTTTATTAAGTGAAGACTGGAGTGAAAATGATGTAATCAACTCAA
TTCGGATGCCAAGTCATGTCCAAGTTGCATCTGTTCCAAGAAATAATGCG
AAAATGCTGCTCTATATGCAGTAAAGGGACTTG
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