BQ623524

Overview
NameBQ623524
Unique NameBQ623524
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length519
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7096 contig Csv1_Contig7096:594..1111. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623524 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.667e-35
Identity = 70/73 (95.89%), Postives = 72/73 (98.63%), Query Frame = 1
Query:   67 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 285
            +FDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA PVNNNAWAYATNFVPGK
Sbjct:  191 SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAGPVNNNAWAYATNFVPGK 263          
BLAST of BQ623524 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.667e-35
Identity = 69/72 (95.83%), Postives = 72/72 (100.00%), Query Frame = 1
Query:   67 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 282
            +FDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWAYATNFVPG
Sbjct:  190 SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPG 261          
BLAST of BQ623524 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 3.483e-35
Identity = 69/73 (94.52%), Postives = 73/73 (100.00%), Query Frame = 1
Query:   67 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 285
            +FDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWA+ATNFVPGK
Sbjct:  195 SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267          
BLAST of BQ623524 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 3.483e-35
Identity = 69/73 (94.52%), Postives = 73/73 (100.00%), Query Frame = 1
Query:   67 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 285
            +FDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWA+ATNFVPGK
Sbjct:  195 SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267          
BLAST of BQ623524 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 3.483e-35
Identity = 70/73 (95.89%), Postives = 72/73 (98.63%), Query Frame = 1
Query:   67 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 285
            +FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW +ATNFVPGK
Sbjct:  195 SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWNFATNFVPGK 267          
BLAST of BQ623524 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 4.548e-35
Identity = 70/73 (95.89%), Postives = 72/73 (98.63%), Query Frame = 1
Query:   67 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 285
            +FDPLGLA DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  194 SFDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266          
BLAST of BQ623524 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 5.940e-35
Identity = 68/72 (94.44%), Postives = 72/72 (100.00%), Query Frame = 1
Query:   70 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 285
            FDPLGLADDP+AFA++KVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  207 FDPLGLADDPDAFADVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278          
BLAST of BQ623524 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 5.940e-35
Identity = 69/73 (94.52%), Postives = 72/73 (98.63%), Query Frame = 1
Query:   67 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 285
            +FDPLGLA+DPEAFAELKVK IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  195 SFDPLGLAEDPEAFAELKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267          
BLAST of BQ623524 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 5.940e-35
Identity = 69/73 (94.52%), Postives = 72/73 (98.63%), Query Frame = 1
Query:   67 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 285
            AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL+DH+ADPV NNAWAYATNFVPGK
Sbjct:  165 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPVANNAWAYATNFVPGK 237          
BLAST of BQ623524 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 7.758e-35
Identity = 69/73 (94.52%), Postives = 72/73 (98.63%), Query Frame = 1
Query:   67 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 285
            AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADH+ADPV NNAWA+ATNFVPGK
Sbjct:  192 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPVANNAWAFATNFVPGK 264          
The following BLAST results are available for this feature:
BLAST of BQ623524 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB23_SOYBN2.667e-3595.89Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB21_MAIZE2.667e-3595.83Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2F_SOLLC3.483e-3594.52Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC3.483e-3594.52Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2A_SPIOL3.483e-3595.89Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_SINAL4.548e-3595.89Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2A_PYRPY5.940e-3594.44Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB25_TOBAC5.940e-3594.52Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB25_SOLLC5.940e-3594.52Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB21_LEMGI7.758e-3594.52Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00615 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00615 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623524 ID=BQ623524; Name=BQ623524; organism=Citrus sinensis; type=EST; length=519bp
TTGAGGGTTACAGAATTGCTGGAGGGCCGCTCGGTGAAGTGACTGACCCA
TTGTACCCAGGTGGCAGCCTTTGATCCATTGGGTTTGGCTGATGACCCGG
AGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAAGAATGGAAGGTTGGCT
ATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCATTGTCACCGGCAAGGG
ACCGTTAGAGAACTTGGCCGACCACTTGGCCGACCCTGTCAACAACAATG
CCTGGGCCTACGCCACCAACTTTGTCCCCGGAAAGTGAGCTTCGGTTGAT
AACATTAGTAGCGTGGAAATTGGAATTGAGAGTGATTGGTTATTGATGTG
ACTCTATTTCAACTTGCAAAACATGTGAATTATGTAATGTACTGCTACTA
CCAGTTTGAGGGGATTGTATTTTCATTCAATCTCTTGTCGCACGGGTCTA
GTTCTAGATACCTCCTCCTTACAGGGTGTGCCCGTAATCTAGTTACCAAA
TTTACATTGCTTAGAAATA
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