BQ623524

Overview
NameBQ623524
Unique NameBQ623524
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length519
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7096 contig Csv1_Contig7096:594..1111. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623524 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.323e-34
Identity = 68/73 (93.15%), Postives = 70/73 (95.89%), Query Frame = 1 
Query:   67 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 285
            +FDPLGL DDPE FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHL DPVNNNAWAYATNFVPGK
Sbjct:  192 SFDPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVNNNAWAYATNFVPGK 264
[Close]
BLAST of BQ623524 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.323e-34
Identity = 68/73 (93.15%), Postives = 72/73 (98.63%), Query Frame = 1 
Query:   67 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 285
            +FDPLGLA DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  195 SFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267
[Close]
BLAST of BQ623524 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.323e-34
Identity = 68/73 (93.15%), Postives = 72/73 (98.63%), Query Frame = 1 
Query:   67 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 285
            +FDPLGLA DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  195 SFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267
[Close]
BLAST of BQ623524 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.728e-34
Identity = 69/73 (94.52%), Postives = 71/73 (97.26%), Query Frame = 1 
Query:   67 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 285
            AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  193 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 265
[Close]
BLAST of BQ623524 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 1.728e-34
Identity = 69/73 (94.52%), Postives = 71/73 (97.26%), Query Frame = 1 
Query:   67 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 285
            AFDPLGLADDP+AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:  193 AFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWAYATNFVPGK 265
[Close]
BLAST of BQ623524 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.948e-34
Identity = 68/73 (93.15%), Postives = 71/73 (97.26%), Query Frame = 1 
Query:   67 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 285
            AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL+DH+ DPV NNAWAYATNFVPGK
Sbjct:  193 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPVANNAWAYATNFVPGK 265
[Close]
BLAST of BQ623524 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 5.029e-34
Identity = 68/73 (93.15%), Postives = 71/73 (97.26%), Query Frame = 1 
Query:   67 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 285
            AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  193 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADPVANNAWAFATNFVPGK 265
[Close]
BLAST of BQ623524 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 5.029e-34
Identity = 67/73 (91.78%), Postives = 70/73 (95.89%), Query Frame = 1 
Query:   67 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 285
            +FDPLGLADDPEAF ELKVKE+K GRLAM SMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWAYATNFVPGK
Sbjct:  193 SFDPLGLADDPEAFGELKVKELKKGRLAMLSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPGK 265
[Close]
BLAST of BQ623524 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.463e-33
Identity = 66/73 (90.41%), Postives = 70/73 (95.89%), Query Frame = 1 
Query:   67 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 285
            +FDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL+DHLADP  NNAWAYATNF PGK
Sbjct:  193 SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAVNNAWAYATNFTPGK 265
[Close]
BLAST of BQ623524 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.463e-33
Identity = 67/73 (91.78%), Postives = 71/73 (97.26%), Query Frame = 1 
Query:   67 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 285
            +FDPLGLA+ PEAFAELKVKE+KNGRLAMFSMFGFFV AIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  156 SFDPLGLAEVPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 228
The following BLAST results are available for this feature:
BLAST of BQ623524 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB48_MAIZE1.323e-3493.15Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB22_ARATH1.323e-3493.15Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH1.323e-3493.15Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB23_TOBAC1.728e-3494.52Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB21_GOSHI1.728e-3494.52Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB24_SOLLC2.948e-3493.15Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB26_PETSP5.029e-3493.15Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB22_MAIZE5.029e-3491.78Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_POLMU1.463e-3390.41Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB21_PEA1.463e-3391.78Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00615 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00615 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623524 ID=BQ623524; Name=BQ623524; organism=Citrus sinensis; type=EST; length=519bp
TTGAGGGTTACAGAATTGCTGGAGGGCCGCTCGGTGAAGTGACTGACCCA
TTGTACCCAGGTGGCAGCCTTTGATCCATTGGGTTTGGCTGATGACCCGG
AGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAAGAATGGAAGGTTGGCT
ATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCATTGTCACCGGCAAGGG
ACCGTTAGAGAACTTGGCCGACCACTTGGCCGACCCTGTCAACAACAATG
CCTGGGCCTACGCCACCAACTTTGTCCCCGGAAAGTGAGCTTCGGTTGAT
AACATTAGTAGCGTGGAAATTGGAATTGAGAGTGATTGGTTATTGATGTG
ACTCTATTTCAACTTGCAAAACATGTGAATTATGTAATGTACTGCTACTA
CCAGTTTGAGGGGATTGTATTTTCATTCAATCTCTTGTCGCACGGGTCTA
GTTCTAGATACCTCCTCCTTACAGGGTGTGCCCGTAATCTAGTTACCAAA
TTTACATTGCTTAGAAATA
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