BQ623525

Overview
NameBQ623525
Unique NameBQ623525
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2449 contig Csv1_Contig2449:480..1174. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623525 vs. ExPASy Swiss-Prot
Match: GLNA_CRYNE (Glutamine synthetase OS=Cryptococcus neoformans GN=GLN1 PE=2 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 4.471e-55
Identity = 76/142 (53.52%), Postives = 91/142 (64.08%), Query Frame = 2
Query:   50 EPWYGIEQEYTLLQKDVK---WPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDG 466
            EPW+G+EQEYTL   D +   WP                    A K + RD +++HY+ACLYAGI ISGIN EVMP QWEFQVGP  GI  GD LW+AR++L RI E  G+  S  PKP++GDWNGAG H+NYSTK MR  G
Sbjct:  126 EPWFGLEQEYTLFDADGQVFGWP----KNGFPGPQGPYYCGVGAGKVFARDFIEAHYRACLYAGIKISGINAEVMPSQWEFQVGPCTGIEMGDHLWMARFLLLRIGEEWGITPSLHPKPLKGDWNGAGCHSNYSTKDMRTPG 263          

HSP 2 Score: 74.3294 bits (181), Expect = 4.471e-55
Identity = 35/52 (67.31%), Postives = 42/52 (80.77%), Query Frame = 3
Query:  480 IKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFNGGVANRGASIRV 635
            I+ AI+KL  +H EHIA YGE N+ RLTGKHETA + TF+ GVANRGASIR+
Sbjct:  269 IEDAIKKLEKKHLEHIAVYGEDNDLRLTGKHETASMTTFSAGVANRGASIRI 320          

HSP 3 Score: 23.483 bits (49), Expect = 4.471e-55
Identity = 9/11 (81.82%), Postives = 9/11 (81.82%), Query Frame = 2
Query:  662 GYFEDRRPAFN 694
            GY EDRRPA N
Sbjct:  330 GYLEDRRPASN 340          
BLAST of BQ623525 vs. ExPASy Swiss-Prot
Match: GLNA_MOUSE (Glutamine synthetase OS=Mus musculus GN=Glul PE=1 SV=6)

HSP 1 Score: 169.859 bits (429), Expect = 9.107e-55
Identity = 81/157 (51.59%), Postives = 104/157 (66.24%), Query Frame = 2
Query:    2 RHAAAKIFSHSDVVAEE-PWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGG 469
            RH   +I    D+V+ + PW+G+EQEYTL+  D   P                    ADKA+GRDIV++HY+ACLYAG+ I+G N EVMP QWEFQ+GP  GI  GD LW+AR+IL R+ E  GV+ +FDPKPI G+WNGAG H N+STK+MR + G
Sbjct:  114 RHICKRIM---DMVSNQHPWFGMEQEYTLMGTDGH-PFGWPSNGFPGPQGPYYCGVGADKAYGRDIVEAHYRACLYAGVKITGTNAEVMPAQWEFQIGPCEGIRMGDHLWIARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKAMREENG 266          

HSP 2 Score: 65.0846 bits (157), Expect = 9.107e-55
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 3
Query:  480 IKKAIEKLGLRHSEHIAAY----GEGNERRLTGKHETADINTFNGGVANRGASIRV 635
            I++AI+KL  RH  HI AY    G  N RRLTG HET++IN F+ GVANRGASIR+
Sbjct:  270 IEEAIDKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRGASIRI 325          
BLAST of BQ623525 vs. ExPASy Swiss-Prot
Match: GLNA_XENLA (Glutamine synthetase OS=Xenopus laevis GN=glul PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.187e-54
Identity = 84/156 (53.85%), Postives = 98/156 (62.82%), Query Frame = 2
Query:    2 RHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGG 469
            RH   KI     V    PW+G+EQEYTLL  +   P                    ADK +GRD+V+SHYKACLYAGI I G N EVMP QWEFQVGP  GI  GD LW+AR+IL R+ E  GVV + DPKP+ G+WNGAG H NYST+SMR +GG
Sbjct:  114 RHTCKKIMEM--VNDHRPWFGMEQEYTLLGINGH-PYGWPENGFPGPQGPYYCGVGADKVYGRDVVESHYKACLYAGIKICGTNAEVMPSQWEFQVGPCEGIDMGDHLWMARFILHRVCEDFGVVATLDPKPMTGNWNGAGCHTNYSTESMRVEGG 266          

HSP 2 Score: 67.781 bits (164), Expect = 1.187e-54
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 3
Query:  480 IKKAIEKLGLRHSEHIAAY----GEGNERRLTGKHETADINTFNGGVANRGASIRV 635
            I+ AIEKLG RH  HI  Y    G+ N RRLTG+HET+ I+ F+ GVANRGASIR+
Sbjct:  270 IEDAIEKLGKRHDYHICVYDPRGGKDNSRRLTGQHETSSIHEFSAGVANRGASIRI 325          
BLAST of BQ623525 vs. ExPASy Swiss-Prot
Match: GLNA_FUSSH (Glutamine synthetase OS=Fusarium solani subsp. phaseoli GN=GLN1 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 4.472e-54
Identity = 85/157 (54.14%), Postives = 100/157 (63.69%), Query Frame = 2
Query:    2 RHAAAKIFSHSDVVAE-EPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGG 469
            RH   K+    D  AE EPW+G+EQEYTLL  D + P                      K   RDIV++HYKACLYAGI ISG N EVMP QWE+QVGP +GI  GDQLWV+R+ L RITE  G  +S  PKPI GDWNGAG H+N+STK+MR +GG
Sbjct:  113 RHDCVKVM---DTYAEDEPWFGLEQEYTLLGPDNR-PYGWPTGGFPAPQGEYYCGVGTGKVVQRDIVEAHYKACLYAGIQISGTNAEVMPAQWEYQVGPCLGIEMGDQLWVSRFFLARITEEFGAKVSLHPKPIAGDWNGAGLHSNFSTKAMREEGG 265          

HSP 2 Score: 65.855 bits (159), Expect = 4.472e-54
Identity = 32/56 (57.14%), Postives = 42/56 (75.00%), Query Frame = 3
Query:  480 IKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFNGGVANRGASIRVGPDT 647
            I++A++KL   H+E IA YGE NE RLTG+HET  I++F+ GVANRG SIR   +T
Sbjct:  269 IEEALKKLEPHHAECIAEYGEDNELRLTGRHETGSIDSFSWGVANRGTSIRAPRET 324          
BLAST of BQ623525 vs. ExPASy Swiss-Prot
Match: GLNA_SCHPO (Glutamine synthetase OS=Schizosaccharomyces pombe GN=gln1 PE=1 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 2.195e-53
Identity = 84/160 (52.50%), Postives = 101/160 (63.12%), Query Frame = 2
Query:    2 RHAAAKIFS-HSDVVAEEPWYGIEQEYTLLQ---KDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGG 469
            R A AK+   H+D   +E W+GIEQEYT+L    +   WP                      + + RDIV++HYKACLYAGINISGIN EVMP QWE+QVGP  GI  GDQLW++R++L RI E  GV +SF PKPI GDWNGAG H N STK  R +GG
Sbjct:  115 RDACAKLLEKHAD---KETWFGIEQEYTMLDYYDRPFGWP----KGGFPGPQGPFYCGVGTGRVFARDIVEAHYKACLYAGINISGINAEVMPSQWEYQVGPCAGIEMGDQLWMSRFLLHRIAEDFGVKISFHPKPILGDWNGAGCHTNVSTKDTRAEGG 267          

HSP 2 Score: 66.2402 bits (160), Expect = 2.195e-53
Identity = 29/54 (53.70%), Postives = 39/54 (72.22%), Query Frame = 3
Query:  474 EGIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFNGGVANRGASIRV 635
            + I+  +EK   RH EHIA YG+ N+ RLTG+HET  I+ F  GVA+RGAS+R+
Sbjct:  269 KAIESYLEKFAKRHKEHIAVYGDDNDLRLTGRHETGSIDKFTYGVADRGASVRI 322          
BLAST of BQ623525 vs. ExPASy Swiss-Prot
Match: GLNA1_DROME (Glutamine synthetase 1, mitochondrial OS=Drosophila melanogaster GN=Gs1 PE=2 SV=3)

HSP 1 Score: 166.777 bits (421), Expect = 2.383e-52
Identity = 80/141 (56.74%), Postives = 98/141 (69.50%), Query Frame = 2
Query:   47 EEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGG 469
            +EPW+GIEQEYTLL  D + P                    AD+ + RD+V++H  ACLYAGI+ +G N EVMP QWEFQ+GPA GI A D LWV+RYIL+RI E  GVV++FDPKP++G WNGAGAH N+STK MR DGG
Sbjct:  164 QEPWFGIEQEYTLLDVDGR-PFGWPENGFPAPQGPYYCGVGADRVYARDLVEAHVVACLYAGIDFAGTNAEVMPAQWEFQIGPA-GIKACDDLWVSRYILQRIAEEYGVVVTFDPKPMEGQWNGAGAHTNFSTKEMRADGG 302          

HSP 2 Score: 60.077 bits (144), Expect = 2.383e-52
Identity = 31/58 (53.45%), Postives = 40/58 (68.97%), Query Frame = 3
Query:  474 EGIKKAIEKLGLRHSEHIAAY----GEGNERRLTGKHETADINTFNGGVANRGASIRV 635
            + I++AIEKL  RH  HI AY    G+ NERRL G+ ET+ I+ F+ GVANR  S+RV
Sbjct:  304 KAIEEAIEKLSKRHERHIKAYDPKEGKDNERRLVGRLETSSIDKFSWGVANRAVSVRV 361          
BLAST of BQ623525 vs. ExPASy Swiss-Prot
Match: GLNA_GIBFU (Glutamine synthetase OS=Gibberella fujikuroi GN=GLN1 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 4.785e-50
Identity = 78/157 (49.68%), Postives = 99/157 (63.06%), Query Frame = 2
Query:    2 RHAAAKIF-SHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGG 469
            RH   K+  +++D   +EP +G+EQEYTLL  D + P                      K   RDIV++HYKACLYAGI ISG N EVMP QWE+QVGP  GI+ GDQLW++R+ L R+ E  G  +S  PKPI GDWNG G H+N+STK+MR +GG
Sbjct:  111 RHDCVKVMDTYAD---DEPLFGLEQEYTLLGSDNR-PYGWPAGGFPAPQGEYYCGVGTGKVVQRDIVEAHYKACLYAGIQISGTNAEVMPAQWEYQVGPCTGIAMGDQLWISRFFLHRVAEEFGAKVSLHPKPIAGDWNG-GLHSNFSTKAMREEGG 262          

HSP 2 Score: 66.2402 bits (160), Expect = 4.785e-50
Identity = 33/56 (58.93%), Postives = 42/56 (75.00%), Query Frame = 3
Query:  480 IKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFNGGVANRGASIRVGPDT 647
            I++A++KL   H E IA YGE NE RLTG+HET  I++F+ GVANRG SIRV  +T
Sbjct:  266 IEEALKKLEPHHVECIAEYGEDNELRLTGRHETGSIDSFSWGVANRGTSIRVPRET 321          
BLAST of BQ623525 vs. ExPASy Swiss-Prot
Match: GLNA2_CHLRE (Glutamine synthetase, chloroplastic OS=Chlamydomonas reinhardtii GN=GLN2 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.792e-49
Identity = 66/145 (45.52%), Postives = 93/145 (64.14%), Query Frame = 2
Query:   38 VVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQ-GDWNGAGAHANYSTKSMRNDGG 469
            V AE+ WYG EQEYT+L K                         A+ A+GR + ++H +AC+ AG+ ISGIN EVMPGQWE+Q+GP   ++ GD++ ++R++L R+ E  G+V +F+PKP++ GDWNG GAH N+STK MR  GG
Sbjct:  144 VTAEDCWYGFEQEYTMLAKTSGHIYGWPAGGFPAPQGPFYCGVGAESAFGRPLAEAHMEACMKAGLVISGINAEVMPGQWEYQIGPVGPLALGDEVMLSRWLLHRLGEDFGIVSTFNPKPVRTGDWNGTGAHTNFSTKGMRVPGG 288          

HSP 2 Score: 75.0998 bits (183), Expect = 1.792e-49
Identity = 35/52 (67.31%), Postives = 41/52 (78.85%), Query Frame = 3
Query:  480 IKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFNGGVANRGASIRV 635
            I++A+EKL   H EHI  YG GNE RLTGKHET DINTF  GVA+RG+SIR+
Sbjct:  292 IEEAVEKLSKTHIEHITQYGIGNEARLTGKHETCDINTFKHGVADRGSSIRI 343          

HSP 3 Score: 23.483 bits (49), Expect = 1.792e-49
Identity = 9/11 (81.82%), Postives = 9/11 (81.82%), Query Frame = 2
Query:  662 GYFEDRRPAFN 694
            GY EDRRPA N
Sbjct:  353 GYLEDRRPAAN 363          
BLAST of BQ623525 vs. ExPASy Swiss-Prot
Match: GLNA_MIMIV (Putative glutamine synthetase OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R565 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 5.196e-49
Identity = 77/156 (49.36%), Postives = 98/156 (62.82%), Query Frame = 2
Query:    2 RHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGG 469
            RH A  IF       E+PWYG+EQEY + +KD   P+                   +  A+GR I D H +ACLYAGI ISG N EV PGQ EFQ+GP  GI A DQLW+AR+ILE+I+E     + + PKP+QGDWNG+G H N+ST+SMR++GG
Sbjct:  110 RHNANIIFEKYQ--NEKPWYGLEQEYFIFRKDTNQPIGMEYASKQGQYYCSVG---SQNAYGRRISDEHMEACLYAGIKISGTNLEVAPGQHEFQIGPVEGIDAADQLWIARFILEKISEHYDRYIVYHPKPLQGDWNGSGCHTNFSTESMRSEGG 260          

HSP 2 Score: 62.003 bits (149), Expect = 5.196e-49
Identity = 28/58 (48.28%), Postives = 40/58 (68.97%), Query Frame = 3
Query:  480 IKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFNGGVANRGASIRVGPDTEK 653
            I +A++KL  +HSEH+  YG  N+ RLTG HETA I+ F+ G+ +R  S+R+  DT K
Sbjct:  264 IMEAVDKLRTKHSEHMKVYGIDNDLRLTGDHETASIDEFSHGIGSRQCSVRIPNDTVK 321          
BLAST of BQ623525 vs. ExPASy Swiss-Prot
Match: GLNA_CRIGR (Glutamine synthetase OS=Cricetulus griseus GN=GLUL PE=2 SV=4)

HSP 1 Score: 153.68 bits (387), Expect = 6.768e-49
Identity = 76/157 (48.41%), Postives = 99/157 (63.06%), Query Frame = 2
Query:    2 RHAAAKIFSHSDVVAEE-PWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGG 469
            RH   +I    D+V+ + PW+G+EQEYTLL  D   P                    ADKA+ RDI+++HY+ACLYAG+ I+G   EV   QWEFQ+GP  GI  GD LWVAR+IL R+ +  GV+ +FD KPI G+WNGAG H N+STK+MR + G
Sbjct:  114 RHTCKRIM---DMVSNQHPWFGMEQEYTLLGTDGH-PFGWPSDGFPGPQGLYYCGVGADKAYRRDIMEAHYRACLYAGVKITGTYAEVKHAQWEFQIGPCEGIRMGDHLWVARFILHRVCKDFGVIATFDSKPIPGNWNGAGCHTNFSTKTMREENG 266          

HSP 2 Score: 61.6178 bits (148), Expect = 6.768e-49
Identity = 33/56 (58.93%), Postives = 40/56 (71.43%), Query Frame = 3
Query:  480 IKKAIEKLGLRHSEHIAAY----GEGNERRLTGKHETADINTFNGGVANRGASIRV 635
            IK+AIEKL  RH  HI AY    G  N RRLTG H+T++IN F+ GVA+R ASIR+
Sbjct:  270 IKEAIEKLSKRHRYHIRAYDPKGGLDNARRLTGFHKTSNINDFSAGVADRSASIRI 325          
The following BLAST results are available for this feature:
BLAST of BQ623525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
GLNA_CRYNE4.471e-5553.52Glutamine synthetase OS=Cryptococcus neoformans GN... [more]
GLNA_MOUSE9.107e-5551.59Glutamine synthetase OS=Mus musculus GN=Glul PE=1 ... [more]
GLNA_XENLA1.187e-5453.85Glutamine synthetase OS=Xenopus laevis GN=glul PE=... [more]
GLNA_FUSSH4.472e-5454.14Glutamine synthetase OS=Fusarium solani subsp. pha... [more]
GLNA_SCHPO2.195e-5352.50Glutamine synthetase OS=Schizosaccharomyces pombe ... [more]
GLNA1_DROME2.383e-5256.74Glutamine synthetase 1, mitochondrial OS=Drosophil... [more]
GLNA_GIBFU4.785e-5049.68Glutamine synthetase OS=Gibberella fujikuroi GN=GL... [more]
GLNA2_CHLRE1.792e-4945.52Glutamine synthetase, chloroplastic OS=Chlamydomon... [more]
GLNA_MIMIV5.196e-4949.36Putative glutamine synthetase OS=Acanthamoeba poly... [more]
GLNA_CRIGR6.768e-4948.41Glutamine synthetase OS=Cricetulus griseus GN=GLUL... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00616 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00616 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623525 ID=BQ623525; Name=BQ623525; organism=Citrus sinensis; type=EST; length=695bp
AAGACATGCAGCTGCCAAGATTTTCAGCCATTCTGACGTTGTGGCTGAAG
AACCATGGTATGGTATTGAGCAGGAATACACCTTACTGCAGAAGGATGTT
AAATGGCCTCTTGGCTGGCCCATCGGTGGTTATCCTGGGCCTCAGGGACC
ATACTACTGTGGTGTTGGTGCTGACAAAGCTTGGGGGCGCGACATTGTAG
ACTCCCATTACAAGGCCTGTCTATATGCAGGAATCAACATCAGTGGCATC
AATGGAGAAGTCATGCCGGGGCAGTGGGAGTTCCAAGTTGGTCCCGCTGT
TGGAATTTCTGCTGGAGATCAGTTGTGGGTTGCCCGCTATATTTTAGAGA
GGATTACAGAGATTGCTGGAGTTGTGCTTTCTTTCGATCCCAAGCCAATT
CAGGGTGACTGGAATGGAGCTGGTGCTCACGCAAATTACAGCACCAAGTC
GATGAGGAACGATGGAGGCTTTTGAGGGTATTAAGAAAGCAATTGAGAAA
CTTGGACTGAGGCACAGTGAGCACATTGCCGCATATGGTGAAGGCAATGA
ACGCCGACTCACTGGCAAACATGAAACAGCTGACATCAACACTTTCAATG
GGGGTGTTGCTAACCGTGGGGCATCAATCCGTGTTGGACCAGACACAGAG
AAAGAAGGAAGGGGTACTTTGAGGACAGGAGACCTGCTTTTAACA
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