BQ623527

Overview
NameBQ623527
Unique NameBQ623527
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623527_ssr515 microsatellite BQ623527_ssr515:515..526. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7023 contig Csv1_Contig7023:172..737. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: THIOM_MOUSE (Thioredoxin, mitochondrial OS=Mus musculus GN=Txn2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.311e-11
Identity = 28/77 (36.36%), Postives = 51/77 (66.23%), Query Frame = 2
Query:  173 WQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKD 403
            +Q  V++S +PV+V+F A WCGPC+++ P ++++  +  GK+   KV+ D+   +A  Y + ++PTV+  KNG+  D
Sbjct:   70 FQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIKNGDVVD 146          
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: THIOM_HUMAN (Thioredoxin, mitochondrial OS=Homo sapiens GN=TXN2 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 4.311e-11
Identity = 28/77 (36.36%), Postives = 51/77 (66.23%), Query Frame = 2
Query:  173 WQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKD 403
            +Q  V++S +PV+V+F A WCGPC+++ P ++++  +  GK+   KV+ D+   +A  Y + ++PTV+  KNG+  D
Sbjct:   70 FQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKNGDVVD 146          
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: THIO_EMENI (Thioredoxin OS=Emericella nidulans GN=TRX1 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 5.630e-11
Identity = 30/86 (34.88%), Postives = 53/86 (61.63%), Query Frame = 2
Query:  152 PAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTV 409
            P  + A +Q  VL++   V+V+ +A WCGPC+ I P +++ ++ Y      Y+++ DE   +A   GIR++PT ++FK+G+K   V
Sbjct:    9 PITSKAEFQEKVLNAKGFVVVDCFATWCGPCKAIAPTVEKFAQTYT-DASFYQIDVDELSEVAAELGIRAMPTFLLFKDGQKVSDV 93          
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: THIOM_BOVIN (Thioredoxin, mitochondrial OS=Bos taurus GN=TXN2 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 5.630e-11
Identity = 28/77 (36.36%), Postives = 51/77 (66.23%), Query Frame = 2
Query:  173 WQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKD 403
            +Q  V++S +PV+V+F A WCGPC+++ P ++++  +  GK+   KV+ D+   +A  Y + ++PTV+  KNG+  D
Sbjct:   70 FQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLALEYEVSAVPTVLAMKNGDVVD 146          
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: PDIA4_HUMAN (Protein disulfide-isomerase A4 OS=Homo sapiens GN=PDIA4 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 5.630e-11
Identity = 31/89 (34.83%), Postives = 52/89 (58.43%), Query Frame = 2
Query:  149 VPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGK--LKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTV 409
            V  V   T+ S+V+D    VL+EF+APWCG C+ + P+ + L+K+Y G+  L   K++   +   + RY +   PT+    +G+KK+ V
Sbjct:  527 VKVVVGKTFDSIVMDPKKDVLIEFYAPWCGHCKQLEPVYNSLAKKYKGQKGLVIAKMDATANDVPSDRYKVEGFPTIYFAPSGDKKNPV 615          
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: PDI2_DICDI (Protein disulfide-isomerase 2 OS=Dictyostelium discoideum GN=pdi2 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.353e-11
Identity = 35/99 (35.35%), Postives = 56/99 (56.57%), Query Frame = 2
Query:  125 EAQETAVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSK--QYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVDW 415
            E +     V      T++ LVLDS   VLVEF+APWCG C+ + PI D+L +  + V  +   K++ D S  + +   IR  PT+M+FK  +K++ + +
Sbjct:  370 EPESNDAPVKVAVGTTFKKLVLDSPKDVLVEFYAPWCGHCKNLAPIYDKLGEYLKDVESVSIVKIDAD-SNDVPSDIEIRGYPTIMLFKADDKENPISY 467          
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: TRXH4_ARATH (Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TRX4 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 9.604e-11
Identity = 27/71 (38.03%), Postives = 46/71 (64.79%), Query Frame = 2
Query:  191 DSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKD 403
            +S   ++++F A WC PCRMI PI ++L+K+++     +KV+ DE  S+A  +G+ ++PT +  K GE  D
Sbjct:   26 ESNKLIVIDFTASWCPPCRMIAPIFNDLAKKFMSSAIFFKVDVDELQSVAKEFGVEAMPTFVFIKAGEVVD 96          
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: NGLY1_CAEEL (Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Caenorhabditis elegans GN=F56G4.5 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.604e-11
Identity = 30/73 (41.10%), Postives = 45/73 (61.64%), Query Frame = 2
Query:  191 DSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTV 409
            D+   ++++F+A WCGPCRMI PI ++ S +Y G     KVN D +  I  RY I ++PT +  KN ++ D V
Sbjct:   20 DANRLIIIDFFANWCGPCRMISPIFEQFSAEY-GNATFLKVNCDVARDIVQRYNISAMPTFIFLKNRQQVDMV 91          
The following BLAST results are available for this feature:
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
THIOM_MOUSE4.311e-1136.36Thioredoxin, mitochondrial OS=Mus musculus GN=Txn2... [more]
THIOM_HUMAN4.311e-1136.36Thioredoxin, mitochondrial OS=Homo sapiens GN=TXN2... [more]
THIO_EMENI5.630e-1134.88Thioredoxin OS=Emericella nidulans GN=TRX1 PE=1 SV... [more]
THIOM_BOVIN5.630e-1136.36Thioredoxin, mitochondrial OS=Bos taurus GN=TXN2 P... [more]
PDIA4_HUMAN5.630e-1134.83Protein disulfide-isomerase A4 OS=Homo sapiens GN=... [more]
PDI2_DICDI7.353e-1135.35Protein disulfide-isomerase 2 OS=Dictyostelium dis... [more]
TRXH4_ARATH9.604e-1138.03Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TR... [more]
NGLY1_CAEEL9.604e-1141.10Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagin... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00618 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00618 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623527 ID=BQ623527; Name=BQ623527; organism=Citrus sinensis; type=EST; length=569bp
CTCTGGCCGTCGGAAATTCGCCGAGTTCAAGGGCCTTAAGGTCAGACCTG
TTCGCTCGTTCGGATCGGTGAGTCAGGGTTCGAGTTCGAGCTTCAGACTC
CGTCGCGGTGCGCAAATCGTGTGCGAGGCTCAAGAAACTGCCGTTGAAGT
GCCTGCTGTGACAGATGCAACATGGCAATCACTTGTTCTTGACTCTGGAT
CACCTGTGCTTGTTGAATTCTGGGCTCCATGGTGCGGGCCTTGCCGGATG
ATCCACCCTATTATTGATGAGCTATCAAAGCAATATGTGGGGAAGCTAAA
ATGCTATAAGGTTAATACTGATGAGAGTCCTTCAATTGCTACTAGATATG
GAATTAGGAGCATCCCAACTGTCATGATATTTAAGAATGGCGAGAAGAAA
GATACAGTGGATTGGGTGCTGTTCCTAAATCCACTTTGACCACCAGCATA
GAGAAATTCTTGTAGACATGGTAAGTAAAGGACGCGTTTGCTAGAAACAG
GCTCTCTGTAGCATTTTGTTTGTTTGCCTTGTAGCTTACTATGCCTTGGG
TTAAGATACTTTGCTTTCC
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