BQ623527

Overview
NameBQ623527
Unique NameBQ623527
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623527_ssr515 microsatellite BQ623527_ssr515:515..526. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7023 contig Csv1_Contig7023:172..737. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: THIO_RICPR (Thioredoxin OS=Rickettsia prowazekii GN=trxA PE=3 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 4.016e-25
Identity = 49/83 (59.04%), Postives = 68/83 (81.93%), Query Frame = 2
Query:  158 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDT 406
            VTD+++++ VL+S  PV+V+FWA WCGPC+M+ PIIDE+SK+   K+K  K+N DE+P   + YGIRSIPT+M+FKNGE+KDT
Sbjct:    5 VTDSSFKNEVLESDLPVMVDFWAEWCGPCKMLIPIIDEISKELQDKVKVLKMNIDENPKTPSEYGIRSIPTIMLFKNGEQKDT 87          
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: THIO_RICBR (Thioredoxin OS=Rickettsia bellii (strain RML369-C) GN=trxA PE=3 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 6.851e-25
Identity = 51/83 (61.45%), Postives = 65/83 (78.31%), Query Frame = 2
Query:  158 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDT 406
            VTD +++  VL S  PVLV+FWA WC PCRM+ PII+E+SK    K+K  K+N DE+P I ++YGIRSIPTVM+FKNGE+KDT
Sbjct:    5 VTDKSFEEEVLKSDLPVLVDFWAEWCSPCRMLTPIIEEISKDLESKVKVLKMNIDENPEIPSKYGIRSIPTVMLFKNGEQKDT 87          
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: THIO_RICTY (Thioredoxin OS=Rickettsia typhi GN=trxA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 8.947e-25
Identity = 48/83 (57.83%), Postives = 67/83 (80.72%), Query Frame = 2
Query:  158 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDT 406
            VTD ++++ VL+S  PV+V+FWA WCGPC+M+ PIIDE+SK+   K+K  K+N DE+P   + YG+RSIPT+M+FKNGE+KDT
Sbjct:    5 VTDISFKNEVLESDLPVIVDFWAEWCGPCKMLIPIIDEISKELQDKVKVLKMNIDENPKTPSEYGVRSIPTIMLFKNGEQKDT 87          
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: THIO_CYAME (Thioredoxin OS=Cyanidioschyzon merolae GN=trxA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.000e-23
Identity = 48/84 (57.14%), Postives = 68/84 (80.95%), Query Frame = 2
Query:  158 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTV 409
            + + T+++ VL S   VLV+FWAPWCGPCRMI PI++E++K++   LK  +VNTDE+P++AT YGIRSIPT+M+FK G++ DTV
Sbjct:    4 IDELTFENEVLQSEKLVLVDFWAPWCGPCRMIGPILEEIAKEF--NLKVVQVNTDENPNLATFYGIRSIPTLMLFKKGQRVDTV 85          

HSP 2 Score: 23.483 bits (49), Expect = 1.000e-23
Identity = 10/17 (58.82%), Postives = 13/17 (76.47%), Query Frame = 1
Query:  412 LGAVPKSTLTTSIEKFL 462
            +GAVPKS L  +I K+L
Sbjct:   86 IGAVPKSILIHTINKYL 102          
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: THIO_STRAU (Thioredoxin (Fragment) OS=Streptomyces aureofaciens GN=trxA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.204e-23
Identity = 46/79 (58.23%), Postives = 65/79 (82.28%), Query Frame = 2
Query:  158 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGE 394
            VT+AT++S VL+S  PVLV F  PWCGPC+M+ P++DE++ +Y GK+K  KVNTDE+P +A++YG+RSIPT ++FK GE
Sbjct:    6 VTNATFKSDVLESDKPVLVHFEGPWCGPCKMVAPVLDEIANEYEGKVKVAKVNTDENPQLASQYGVRSIPTRLMFKGGE 84          
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: TRXM3_ARATH (Thioredoxin M-type 3, chloroplastic OS=Arabidopsis thaliana GN=At2g15570 PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 8.375e-23
Identity = 46/97 (47.42%), Postives = 65/97 (67.01%), Query Frame = 2
Query:  119 VCEAQETAVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTV 409
            +C     A EV   T  +W+  VL S +PVLVEF+  WCGPCRM+H IIDE++  Y GKL CY +N D    +A  Y I+++P V++FKNGEK++++
Sbjct:   61 LCVRDSRAAEV---TQRSWEDSVLKSETPVLVEFYTSWCGPCRMVHRIIDEIAGDYAGKLNCYLLNADNDLPVAEEYEIKAVPVVLLFKNGEKRESI 154          
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: THIO_PASMU (Thioredoxin OS=Pasteurella multocida GN=trxA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.089e-22
Identity = 44/84 (52.38%), Postives = 66/84 (78.57%), Query Frame = 2
Query:  143 VEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGE 394
            +EV   TDAT+ + V++S  PVL++FWAPWCGPCRMI PI+DE++ ++ GK+K  K+N DE+ +   + G+RSIPT+++FKNG+
Sbjct:    1 MEVLHSTDATFTADVVNSDVPVLLDFWAPWCGPCRMISPILDEIAAEFSGKVKVVKINIDENQATPAQLGVRSIPTLVLFKNGK 84          
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: THIO_HAEIN (Thioredoxin OS=Haemophilus influenzae GN=trxA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.209e-21
Identity = 39/83 (46.99%), Postives = 66/83 (79.52%), Query Frame = 2
Query:  146 EVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGE 394
            EV  + DA ++S+V++S  P+L++FWAPWCGPC+MI P++DEL+ ++ GK+K  K+N D++ +   ++G+RSIPT+++ KNG+
Sbjct:    3 EVLHINDADFESVVVNSDIPILLDFWAPWCGPCKMIAPVLDELAPEFAGKVKIVKMNVDDNQATPAQFGVRSIPTLLLIKNGQ 85          
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: THIO_PSEAE (Thioredoxin OS=Pseudomonas aeruginosa GN=trxA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.595e-21
Identity = 42/83 (50.60%), Postives = 62/83 (74.70%), Query Frame = 2
Query:  158 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDT 406
            VTDA+++  VL +  PVLV++WA WCGPC+MI P++DE+++ Y GKLK  K+N DE+     +YG+R IPT+M+FK+G  + T
Sbjct:    8 VTDASFEQDVLKADGPVLVDYWAEWCGPCKMIAPVLDEVARDYQGKLKVCKLNIDENQDTPPKYGVRGIPTLMLFKDGNVEAT 90          
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: THIO1_CORNE (Thioredoxin C-1 OS=Corynebacterium nephridii PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.002e-21
Identity = 44/97 (45.36%), Postives = 66/97 (68.04%), Query Frame = 2
Query:  158 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGE----------KKDTVDWV 418
            V ++ +QS VL S  PV+V+FWA WCGPC+MI P +DE++ +  G++K  KVN DE+P +A ++G+RSIPT+++FK+GE          K    DW+
Sbjct:    5 VDNSNFQSDVLQSSEPVVVDFWAEWCGPCKMIAPALDEIATEMAGQVKIAKVNIDENPELAAQFGVRSIPTLLMFKDGELAANMVGAAPKSRLADWI 101          
The following BLAST results are available for this feature:
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
THIO_RICPR4.016e-2559.04Thioredoxin OS=Rickettsia prowazekii GN=trxA PE=3 ... [more]
THIO_RICBR6.851e-2561.45Thioredoxin OS=Rickettsia bellii (strain RML369-C)... [more]
THIO_RICTY8.947e-2557.83Thioredoxin OS=Rickettsia typhi GN=trxA PE=3 SV=1[more]
THIO_CYAME1.000e-2357.14Thioredoxin OS=Cyanidioschyzon merolae GN=trxA PE=... [more]
THIO_STRAU2.204e-2358.23Thioredoxin (Fragment) OS=Streptomyces aureofacien... [more]
TRXM3_ARATH8.375e-2347.42Thioredoxin M-type 3, chloroplastic OS=Arabidopsis... [more]
THIO_PASMU7.089e-2252.38Thioredoxin OS=Pasteurella multocida GN=trxA PE=3 ... [more]
THIO_HAEIN1.209e-2146.99Thioredoxin OS=Haemophilus influenzae GN=trxA PE=3... [more]
THIO_PSEAE4.595e-2150.60Thioredoxin OS=Pseudomonas aeruginosa GN=trxA PE=3... [more]
THIO1_CORNE6.002e-2145.36Thioredoxin C-1 OS=Corynebacterium nephridii PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00618 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00618 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623527 ID=BQ623527; Name=BQ623527; organism=Citrus sinensis; type=EST; length=569bp
CTCTGGCCGTCGGAAATTCGCCGAGTTCAAGGGCCTTAAGGTCAGACCTG
TTCGCTCGTTCGGATCGGTGAGTCAGGGTTCGAGTTCGAGCTTCAGACTC
CGTCGCGGTGCGCAAATCGTGTGCGAGGCTCAAGAAACTGCCGTTGAAGT
GCCTGCTGTGACAGATGCAACATGGCAATCACTTGTTCTTGACTCTGGAT
CACCTGTGCTTGTTGAATTCTGGGCTCCATGGTGCGGGCCTTGCCGGATG
ATCCACCCTATTATTGATGAGCTATCAAAGCAATATGTGGGGAAGCTAAA
ATGCTATAAGGTTAATACTGATGAGAGTCCTTCAATTGCTACTAGATATG
GAATTAGGAGCATCCCAACTGTCATGATATTTAAGAATGGCGAGAAGAAA
GATACAGTGGATTGGGTGCTGTTCCTAAATCCACTTTGACCACCAGCATA
GAGAAATTCTTGTAGACATGGTAAGTAAAGGACGCGTTTGCTAGAAACAG
GCTCTCTGTAGCATTTTGTTTGTTTGCCTTGTAGCTTACTATGCCTTGGG
TTAAGATACTTTGCTTTCC
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