BQ623527

Overview
NameBQ623527
Unique NameBQ623527
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623527_ssr515 microsatellite BQ623527_ssr515:515..526. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7023 contig Csv1_Contig7023:172..737. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: THIO_RHOSH (Thioredoxin OS=Rhodobacter sphaeroides GN=trxA PE=1 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 1.337e-20
Identity = 43/79 (54.43%), Postives = 56/79 (70.89%), Query Frame = 2
Query:  158 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGE 394
            VTDAT+ + V  S  PV+V+FWA WCGPCR I P ++ELSK+Y GK+K  KVN DE+P      G+R IP + +FKNG+
Sbjct:    6 VTDATFDTEVRKSDVPVVVDFWAEWCGPCRQIGPALEELSKEYAGKVKIVKVNVDENPESPAMLGVRGIPALFLFKNGQ 84          
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: THIO_SHIFL (Thioredoxin-1 OS=Shigella flexneri GN=trxA PE=3 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 1.746e-20
Identity = 41/79 (51.90%), Postives = 60/79 (75.95%), Query Frame = 2
Query:  158 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGE 394
            +TD ++ + VL +   +LV+FWA WCGPC+MI PI+DE++ +Y GKL   K+N D++P  A +YGIR IPT+++FKNGE
Sbjct:    8 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGE 86          
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: THIO_SALTY (Thioredoxin-1 OS=Salmonella typhimurium GN=trxA PE=3 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 1.746e-20
Identity = 41/79 (51.90%), Postives = 60/79 (75.95%), Query Frame = 2
Query:  158 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGE 394
            +TD ++ + VL +   +LV+FWA WCGPC+MI PI+DE++ +Y GKL   K+N D++P  A +YGIR IPT+++FKNGE
Sbjct:    8 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGE 86          
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: THIO_SALTI (Thioredoxin-1 OS=Salmonella typhi GN=trxA PE=3 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 1.746e-20
Identity = 41/79 (51.90%), Postives = 60/79 (75.95%), Query Frame = 2
Query:  158 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGE 394
            +TD ++ + VL +   +LV+FWA WCGPC+MI PI+DE++ +Y GKL   K+N D++P  A +YGIR IPT+++FKNGE
Sbjct:    8 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGE 86          
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: THIO_ECOLI (Thioredoxin-1 OS=Escherichia coli (strain K12) GN=trxA PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 1.746e-20
Identity = 41/79 (51.90%), Postives = 60/79 (75.95%), Query Frame = 2
Query:  158 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGE 394
            +TD ++ + VL +   +LV+FWA WCGPC+MI PI+DE++ +Y GKL   K+N D++P  A +YGIR IPT+++FKNGE
Sbjct:    8 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGE 86          
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: THIO_ECOL6 (Thioredoxin-1 OS=Escherichia coli O6 GN=trxA PE=3 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 1.746e-20
Identity = 41/79 (51.90%), Postives = 60/79 (75.95%), Query Frame = 2
Query:  158 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGE 394
            +TD ++ + VL +   +LV+FWA WCGPC+MI PI+DE++ +Y GKL   K+N D++P  A +YGIR IPT+++FKNGE
Sbjct:    8 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGE 86          
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: THIO_ECO57 (Thioredoxin-1 OS=Escherichia coli O157:H7 GN=trxA PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 1.746e-20
Identity = 41/79 (51.90%), Postives = 60/79 (75.95%), Query Frame = 2
Query:  158 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGE 394
            +TD ++ + VL +   +LV+FWA WCGPC+MI PI+DE++ +Y GKL   K+N D++P  A +YGIR IPT+++FKNGE
Sbjct:    8 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGE 86          
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: THIO_CHLLT (Thioredoxin OS=Chlorobium limicola f.sp. thiosulfatophilum GN=trxA PE=1 SV=5)

HSP 1 Score: 97.8265 bits (242), Expect = 3.890e-20
Identity = 43/81 (53.09%), Postives = 59/81 (72.84%), Query Frame = 2
Query:  161 TDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKD 403
            TD  +Q+ +LDS   VLV+FWA WCGPC M+ P+I++L+  Y GK    K+N DE+P+IA +YGIRSIPT++I K G+  D
Sbjct:    8 TDKNFQTEILDSDKAVLVDFWASWCGPCMMLGPVIEQLADDYEGKAIIAKLNVDENPNIAGQYGIRSIPTMLIIKGGKVVD 88          
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: THIO_THIRO (Thioredoxin (Fragment) OS=Thiocapsa roseopersicina GN=trxA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.081e-20
Identity = 41/83 (49.40%), Postives = 61/83 (73.49%), Query Frame = 2
Query:  158 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDT 406
            VTD +++  VL S  PVLV++WA WCGPC+MI P++DE++ +Y G++K  K+N DE+P+   RYGIR IPT+M+ +  E + T
Sbjct:    8 VTDDSFEDEVLKSLEPVLVDYWADWCGPCKMIAPVLDEIAGEYAGRIKVAKLNIDENPNTPRRYGIRGIPTLMLSRQSEVEAT 90          
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: THIO_CHRVI (Thioredoxin OS=Chromatium vinosum GN=trxA PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.478e-19
Identity = 40/83 (48.19%), Postives = 58/83 (69.88%), Query Frame = 2
Query:  158 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDT 406
            VTD +++  V  S  PVLV++WA WCGPC+M  P+ DE++ +Y G++K  K N DE+P+   RYG R IPT+M+F+ GE + T
Sbjct:    7 VTDDSFEEEVXKSPDPVLVDYWADWCGPCKMXAPVXDEIADEYAGRVKXAKXNXDENPNTPPRYGXRGIPTLMLFRGGEVEAT 89          
The following BLAST results are available for this feature:
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
THIO_RHOSH1.337e-2054.43Thioredoxin OS=Rhodobacter sphaeroides GN=trxA PE=... [more]
THIO_SHIFL1.746e-2051.90Thioredoxin-1 OS=Shigella flexneri GN=trxA PE=3 SV... [more]
THIO_SALTY1.746e-2051.90Thioredoxin-1 OS=Salmonella typhimurium GN=trxA PE... [more]
THIO_SALTI1.746e-2051.90Thioredoxin-1 OS=Salmonella typhi GN=trxA PE=3 SV=... [more]
THIO_ECOLI1.746e-2051.90Thioredoxin-1 OS=Escherichia coli (strain K12) GN=... [more]
THIO_ECOL61.746e-2051.90Thioredoxin-1 OS=Escherichia coli O6 GN=trxA PE=3 ... [more]
THIO_ECO571.746e-2051.90Thioredoxin-1 OS=Escherichia coli O157:H7 GN=trxA ... [more]
THIO_CHLLT3.890e-2053.09Thioredoxin OS=Chlorobium limicola f.sp. thiosulfa... [more]
THIO_THIRO5.081e-2049.40Thioredoxin (Fragment) OS=Thiocapsa roseopersicina... [more]
THIO_CHRVI1.478e-1948.19Thioredoxin OS=Chromatium vinosum GN=trxA PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00618 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00618 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623527 ID=BQ623527; Name=BQ623527; organism=Citrus sinensis; type=EST; length=569bp
CTCTGGCCGTCGGAAATTCGCCGAGTTCAAGGGCCTTAAGGTCAGACCTG
TTCGCTCGTTCGGATCGGTGAGTCAGGGTTCGAGTTCGAGCTTCAGACTC
CGTCGCGGTGCGCAAATCGTGTGCGAGGCTCAAGAAACTGCCGTTGAAGT
GCCTGCTGTGACAGATGCAACATGGCAATCACTTGTTCTTGACTCTGGAT
CACCTGTGCTTGTTGAATTCTGGGCTCCATGGTGCGGGCCTTGCCGGATG
ATCCACCCTATTATTGATGAGCTATCAAAGCAATATGTGGGGAAGCTAAA
ATGCTATAAGGTTAATACTGATGAGAGTCCTTCAATTGCTACTAGATATG
GAATTAGGAGCATCCCAACTGTCATGATATTTAAGAATGGCGAGAAGAAA
GATACAGTGGATTGGGTGCTGTTCCTAAATCCACTTTGACCACCAGCATA
GAGAAATTCTTGTAGACATGGTAAGTAAAGGACGCGTTTGCTAGAAACAG
GCTCTCTGTAGCATTTTGTTTGTTTGCCTTGTAGCTTACTATGCCTTGGG
TTAAGATACTTTGCTTTCC
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