BQ623527

Overview
NameBQ623527
Unique NameBQ623527
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623527_ssr515 microsatellite BQ623527_ssr515:515..526. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7023 contig Csv1_Contig7023:172..737. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: THIO_STAHJ (Thioredoxin OS=Staphylococcus haemolyticus (strain JCSC1435) GN=trxA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.813e-16
Identity = 34/67 (50.75%), Postives = 50/67 (74.63%), Query Frame = 2
Query:  209 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTV 409
            LV+FWA WCGPC+MI P+++EL+  Y GK    K++ DE+PS A ++ + SIPT+++FK+GE  D V
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKFEVMSIPTLIVFKDGEPVDKV 87          
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: THIO_MYCTU (Thioredoxin OS=Mycobacterium tuberculosis GN=trxA PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 7.592e-16
Identity = 34/79 (43.04%), Postives = 56/79 (70.89%), Query Frame = 2
Query:  158 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGE 394
            VTDA++ + VL S  PVLV+FWA WCGPC+M+ P+++E++ +    L   K++ D +P  A  + + SIPT+++FK+G+
Sbjct:   12 VTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQ 90          
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: THIO_MYCBO (Thioredoxin OS=Mycobacterium bovis GN=trxA PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 7.592e-16
Identity = 34/79 (43.04%), Postives = 56/79 (70.89%), Query Frame = 2
Query:  158 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGE 394
            VTDA++ + VL S  PVLV+FWA WCGPC+M+ P+++E++ +    L   K++ D +P  A  + + SIPT+++FK+G+
Sbjct:   12 VTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQ 90          
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: TRXB_MYCLE (Bifunctional thioredoxin reductase/thioredoxin OS=Mycobacterium leprae GN=trxB/A PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.295e-15
Identity = 33/79 (41.77%), Postives = 57/79 (72.15%), Query Frame = 2
Query:  158 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGE 394
            VTDA++ + VL S  PVLV+FWA WCGPC+M+ P+++E++ +   +L   K++ D +P +A  + + SIPT+++F+ G+
Sbjct:  354 VTDASFFADVLSSNKPVLVDFWATWCGPCKMVAPVLEEIASEQRNQLTVAKLDVDTNPEMAREFQVVSIPTMILFQGGQ 432          
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: THIO_LISMO (Thioredoxin OS=Listeria monocytogenes GN=trxA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.394e-15
Identity = 36/87 (41.38%), Postives = 57/87 (65.52%), Query Frame = 2
Query:  149 VPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTV 409
            V  +TDAT++     S   VL +FWA WCGPCRM+ P+++E+ ++    LK  K++ DE+P     +G+ SIPT++I K+GE  +T+
Sbjct:    2 VKEITDATFEQET--SEGLVLTDFWATWCGPCRMVAPVLEEIQEERGEALKIVKMDVDENPETPGSFGVMSIPTLLIKKDGEVVETI 86          
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: THIO_LISIN (Thioredoxin OS=Listeria innocua GN=trxA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.394e-15
Identity = 36/87 (41.38%), Postives = 57/87 (65.52%), Query Frame = 2
Query:  149 VPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTV 409
            V  +TDAT++     S   VL +FWA WCGPCRM+ P+++E+ ++    LK  K++ DE+P     +G+ SIPT++I K+GE  +T+
Sbjct:    2 VKEITDATFEQET--SEGLVLTDFWATWCGPCRMVAPVLEEIQEERGEALKIVKMDVDENPETPGSFGVMSIPTLLIKKDGEVVETI 86          
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: THIO1_CHLTE (Thioredoxin-1 OS=Chlorobium tepidum GN=trx1 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.432e-14
Identity = 31/77 (40.26%), Postives = 49/77 (63.64%), Query Frame = 2
Query:  170 TWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKK 400
            T   L+  S  PV ++FWA WCGPC+M+ P + +L+ ++ G+L   KVN D+ P  A R+ ++ IP +M+F  G+ K
Sbjct:    4 TLDDLIRTSELPVFIDFWADWCGPCKMVAPSVKQLASEFKGRLIVVKVNVDQQPDAAARFQVQGIPALMLFVGGQLK 80          
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: THIO_BUCAP (Thioredoxin OS=Buchnera aphidicola subsp. Schizaphis graminum GN=trxA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.870e-14
Identity = 32/79 (40.51%), Postives = 55/79 (69.62%), Query Frame = 2
Query:  158 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGE 394
            +TD  ++  VL+  S VLV+FWA WC PC+++ PI++E++++Y  K+K  K+N +++P+ A  Y IR IP +++F   E
Sbjct:    7 LTDQNFEKEVLEHKSFVLVDFWAEWCNPCKILAPILEEIAQEYFNKIKVGKLNIEKNPNTAPIYSIRGIPALLLFHGRE 85          
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: THIO1_SYNY3 (Thioredoxin-like protein slr0233 OS=Synechocystis sp. (strain PCC 6803) GN=slr0233 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.442e-14
Identity = 31/76 (40.79%), Postives = 56/76 (73.68%), Query Frame = 2
Query:  167 ATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGE 394
            A +  ++  S  PVLV+F+A WCGPC+M+ PI++++      +++  K++TD+ P+IAT+Y I+S+PT+++FK G+
Sbjct:    8 ANFAEMLAGSPKPVLVDFYATWCGPCQMMAPILEQVGSHLRQQIQVVKIDTDKYPAIATQYQIQSLPTLVLFKQGQ 83          
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: THIO_MYCSM (Thioredoxin OS=Mycobacterium smegmatis GN=trxA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.166e-14
Identity = 35/81 (43.21%), Postives = 57/81 (70.37%), Query Frame = 2
Query:  155 AVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYK--VNTDESPSIATRYGIRSIPTVMIFKNG 391
            AVTD ++ + VL S  PVLV+FWA WCGPC+M+ P+++E++ +   +L   K  V+ D +P+ A  + + SIPT+++FK+G
Sbjct:    9 AVTDDSFSTDVLGSSKPVLVDFWATWCGPCKMVAPVLEEIAAEKGDQLTVAKIDVDVDANPATARDFQVVSIPTMILFKDG 89          
The following BLAST results are available for this feature:
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
THIO_STAHJ5.813e-1650.75Thioredoxin OS=Staphylococcus haemolyticus (strain... [more]
THIO_MYCTU7.592e-1643.04Thioredoxin OS=Mycobacterium tuberculosis GN=trxA ... [more]
THIO_MYCBO7.592e-1643.04Thioredoxin OS=Mycobacterium bovis GN=trxA PE=3 SV... [more]
TRXB_MYCLE1.295e-1541.77Bifunctional thioredoxin reductase/thioredoxin OS=... [more]
THIO_LISMO8.394e-1541.38Thioredoxin OS=Listeria monocytogenes GN=trxA PE=3... [more]
THIO_LISIN8.394e-1541.38Thioredoxin OS=Listeria innocua GN=trxA PE=3 SV=1[more]
THIO1_CHLTE1.432e-1440.26Thioredoxin-1 OS=Chlorobium tepidum GN=trx1 PE=3 S... [more]
THIO_BUCAP1.870e-1440.51Thioredoxin OS=Buchnera aphidicola subsp. Schizaph... [more]
THIO1_SYNY32.442e-1440.79Thioredoxin-like protein slr0233 OS=Synechocystis ... [more]
THIO_MYCSM4.166e-1443.21Thioredoxin OS=Mycobacterium smegmatis GN=trxA PE=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00618 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00618 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623527 ID=BQ623527; Name=BQ623527; organism=Citrus sinensis; type=EST; length=569bp
CTCTGGCCGTCGGAAATTCGCCGAGTTCAAGGGCCTTAAGGTCAGACCTG
TTCGCTCGTTCGGATCGGTGAGTCAGGGTTCGAGTTCGAGCTTCAGACTC
CGTCGCGGTGCGCAAATCGTGTGCGAGGCTCAAGAAACTGCCGTTGAAGT
GCCTGCTGTGACAGATGCAACATGGCAATCACTTGTTCTTGACTCTGGAT
CACCTGTGCTTGTTGAATTCTGGGCTCCATGGTGCGGGCCTTGCCGGATG
ATCCACCCTATTATTGATGAGCTATCAAAGCAATATGTGGGGAAGCTAAA
ATGCTATAAGGTTAATACTGATGAGAGTCCTTCAATTGCTACTAGATATG
GAATTAGGAGCATCCCAACTGTCATGATATTTAAGAATGGCGAGAAGAAA
GATACAGTGGATTGGGTGCTGTTCCTAAATCCACTTTGACCACCAGCATA
GAGAAATTCTTGTAGACATGGTAAGTAAAGGACGCGTTTGCTAGAAACAG
GCTCTCTGTAGCATTTTGTTTGTTTGCCTTGTAGCTTACTATGCCTTGGG
TTAAGATACTTTGCTTTCC
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