BQ623527

Overview
NameBQ623527
Unique NameBQ623527
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: TRXX_ARATH (Thioredoxin-X, chloroplastic OS=Arabidopsis thaliana GN=ATHX PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.068e-13
Identity = 30/83 (36.14%), Postives = 55/83 (66.27%), Query Frame = 2
Query:  149 VPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEK 397
            +  + ++ + S VL+S  PVLVEF A WCGPC++I+P ++ LS++Y  KL   K++ D +P +   + +  +P  ++FK+G++
Sbjct:   71 IKEIGESEFSSTVLESAQPVLVEFVATWCGPCKLIYPAMEALSQEYGDKLTIVKIDHDANPKLIAEFKVYGLPHFILFKDGKE 153          
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: THIO2_ANASP (Thioredoxin-2 OS=Anabaena sp. (strain PCC 7120) GN=trxB PE=1 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 2.068e-13
Identity = 32/91 (35.16%), Postives = 55/91 (60.44%), Query Frame = 2
Query:  149 VPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVDWVL 421
            V  +TDA ++S VL +  PVLV FWA WCGPC+++ P+I+  +  Y  +LK  K+  D +P+   +Y +  +P + + K  +  D+ + V+
Sbjct:    5 VITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPALRLVKGEQILDSTEGVI 95          
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: THIO2_SYNY3 (Thioredoxin-like protein slr1139 OS=Synechocystis sp. (strain PCC 6803) GN=slr1139 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.527e-13
Identity = 31/79 (39.24%), Postives = 46/79 (58.23%), Query Frame = 2
Query:  158 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGE 394
            +TDA ++        PVLV FWA WCGPCR++ P I  ++K Y  KLK  K+  D +P+   +  +  +P + +FKN E
Sbjct:    6 ITDAEFEQETQGQTKPVLVYFWASWCGPCRLMAPAIQAIAKDYGDKLKVLKLEVDPNPAAVAQCKVEGVPALRLFKNNE 84          
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: THIO_PENCH (Thioredoxin OS=Penicillium chrysogenum GN=TRXA PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.985e-12
Identity = 32/86 (37.21%), Postives = 54/86 (62.79%), Query Frame = 2
Query:  152 PAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTV 409
            P  + A ++  V D+  PV+V+F A WCGPC+ I P +++LS+ + G ++ YKV+ DE   +A   G+ ++PT   +K GE+ + V
Sbjct:    5 PIKSVAEYKEKVTDATGPVVVDFHATWCGPCKAIAPALEKLSETHTG-IQFYKVDVDELSEVAASNGVSAMPTFHFYKGGERNEEV 89          
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: THIO_CHLCV (Thioredoxin OS=Chlamydophila caviae GN=trxA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.985e-12
Identity = 30/68 (44.12%), Postives = 50/68 (73.53%), Query Frame = 2
Query:  206 VLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTV 409
            VL++F+A WCGPC+M+ P+++ L  + V  +   KVN D+ P+ A +YG+ SIPT+++FK+G++ D V
Sbjct:   19 VLIDFFAEWCGPCKMLTPVLESLEAE-VSSVLIGKVNIDDHPAPAEQYGVSSIPTLILFKDGKEVDRV 85          
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: THIO_BORBU (Thioredoxin OS=Borrelia burgdorferi GN=trxA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.899e-12
Identity = 28/73 (38.36%), Postives = 52/73 (71.23%), Query Frame = 2
Query:  203 PVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK-NGEKKDTVDWV 418
            P +++F+A WCGPC+M+ PI ++LSK+Y   +  YKV+TD+   I++  G++S+PT++    +G+ K +V ++
Sbjct:   30 PAIIDFYANWCGPCKMLSPIFEKLSKKYENSIDFYKVDTDKEQDISSAIGVQSLPTILFIPVDGKPKVSVGFL 102          
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: THIO2_DROYA (Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.899e-12
Identity = 33/68 (48.53%), Postives = 43/68 (63.24%), Query Frame = 2
Query:  194 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEK 397
            SG  V+++F+A WCGPC+MI P + ELS QY   +   KV+ DE   IA  Y I S+PT +  KNG K
Sbjct:   19 SGKLVVLDFFATWCGPCKMISPKLAELSTQYADTVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVK 86          
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: THIO2_CAEEL (Probable thioredoxin-2 OS=Caenorhabditis elegans GN=trx-2 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 3.899e-12
Identity = 34/84 (40.48%), Postives = 51/84 (60.71%), Query Frame = 2
Query:  146 EVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEK 397
            ++ +V D T +  V+ S  PV+V+F A WCGPC+ + P ++E      G +   K+N D +  +A  YGI ++PTV  FKNGEK
Sbjct:   41 DIDSVEDFTEK--VIQSSVPVIVDFHAEWCGPCQALGPRLEEKVNGRQGSVLLAKINVDHAGELAMDYGISAVPTVFAFKNGEK 122          
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: THIO_TREPA (Thioredoxin OS=Treponema pallidum GN=trxA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.092e-12
Identity = 25/72 (34.72%), Postives = 49/72 (68.06%), Query Frame = 2
Query:  188 LDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKD 403
            +++   V+V+FWAPWCG C+M+ P+++E+  +    +   K+N D+   +A  + + SIPT+++FK+G++ D
Sbjct:   15 IETNPLVIVDFWAPWCGSCKMLGPVLEEVESEVGSGVVIGKLNVDDDQDLAVEFNVASIPTLIVFKDGKEVD 86          
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: THIOT_DROME (Thioredoxin-T OS=Drosophila melanogaster GN=TrxT PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.092e-12
Identity = 29/72 (40.28%), Postives = 45/72 (62.50%), Query Frame = 2
Query:  176 QSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNG 391
            Q L+L     V+++F+A WCGPC++I P +DEL+ +Y  ++   KVN DE+  I   Y + S+PT +  K G
Sbjct:   13 QQLILAEDKLVVIDFYADWCGPCKIIAPKLDELAHEYSDRVVVLKVNVDENEDITVEYNVNSMPTFVFIKGG 84          
The following BLAST results are available for this feature:
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
TRXX_ARATH2.068e-1336.14Thioredoxin-X, chloroplastic OS=Arabidopsis thalia... [more]
THIO2_ANASP2.068e-1335.16Thioredoxin-2 OS=Anabaena sp. (strain PCC 7120) GN... [more]
THIO2_SYNY33.527e-1339.24Thioredoxin-like protein slr1139 OS=Synechocystis ... [more]
THIO_PENCH2.985e-1237.21Thioredoxin OS=Penicillium chrysogenum GN=TRXA PE=... [more]
THIO_CHLCV2.985e-1244.12Thioredoxin OS=Chlamydophila caviae GN=trxA PE=3 S... [more]
THIO_BORBU3.899e-1238.36Thioredoxin OS=Borrelia burgdorferi GN=trxA PE=3 S... [more]
THIO2_DROYA3.899e-1248.53Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 S... [more]
THIO2_CAEEL3.899e-1240.48Probable thioredoxin-2 OS=Caenorhabditis elegans G... [more]
THIO_TREPA5.092e-1234.72Thioredoxin OS=Treponema pallidum GN=trxA PE=3 SV=... [more]
THIOT_DROME5.092e-1240.28Thioredoxin-T OS=Drosophila melanogaster GN=TrxT P... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00618 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00618 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623527 ID=BQ623527; Name=BQ623527; organism=Citrus sinensis; type=EST; length=569bp
CTCTGGCCGTCGGAAATTCGCCGAGTTCAAGGGCCTTAAGGTCAGACCTG
TTCGCTCGTTCGGATCGGTGAGTCAGGGTTCGAGTTCGAGCTTCAGACTC
CGTCGCGGTGCGCAAATCGTGTGCGAGGCTCAAGAAACTGCCGTTGAAGT
GCCTGCTGTGACAGATGCAACATGGCAATCACTTGTTCTTGACTCTGGAT
CACCTGTGCTTGTTGAATTCTGGGCTCCATGGTGCGGGCCTTGCCGGATG
ATCCACCCTATTATTGATGAGCTATCAAAGCAATATGTGGGGAAGCTAAA
ATGCTATAAGGTTAATACTGATGAGAGTCCTTCAATTGCTACTAGATATG
GAATTAGGAGCATCCCAACTGTCATGATATTTAAGAATGGCGAGAAGAAA
GATACAGTGGATTGGGTGCTGTTCCTAAATCCACTTTGACCACCAGCATA
GAGAAATTCTTGTAGACATGGTAAGTAAAGGACGCGTTTGCTAGAAACAG
GCTCTCTGTAGCATTTTGTTTGTTTGCCTTGTAGCTTACTATGCCTTGGG
TTAAGATACTTTGCTTTCC
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