BQ623527

Overview
NameBQ623527
Unique NameBQ623527
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: NGLY1_CAEBR (Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Caenorhabditis briggsae GN=png-1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.092e-12
Identity = 33/73 (45.21%), Postives = 47/73 (64.38%), Query Frame = 2
Query:  191 DSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTV 409
            DS   ++V+F+A WCGPCRMI P  + LS ++ G     KVNTD +  I  RY I ++PT + FKN ++ D+V
Sbjct:   20 DSNRLIIVDFFANWCGPCRMISPAFERLSMEF-GNATFLKVNTDLARDIVMRYSISAMPTFLFFKNKQQVDSV 91          
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: PDIA6_MESAU (Protein disulfide-isomerase A6 OS=Mesocricetus auratus GN=PDIA6 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.651e-12
Identity = 36/87 (41.38%), Postives = 51/87 (58.62%), Query Frame = 2
Query:  146 EVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHP----IIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGE 394
            +V  +TD T+   VLDS    +VEF+APWCG C+ + P       E+ +Q  GK+K   V+   +  +A RYGIR  PT+ IF+ GE
Sbjct:  161 DVIELTDDTFDKNVLDSDDVWMVEFYAPWCGHCKNLEPEWATAATEVKEQTKGKVKLAAVDATVNQVLANRYGIRGFPTIKIFQKGE 247          
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: THIO2_DROME (Thioredoxin-2 OS=Drosophila melanogaster GN=Trx-2 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.134e-11
Identity = 32/68 (47.06%), Postives = 43/68 (63.24%), Query Frame = 2
Query:  194 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEK 397
            SG  V+++F+A WCGPC+MI P + ELS Q+   +   KV+ DE   IA  Y I S+PT +  KNG K
Sbjct:   27 SGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVK 94          
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: PDIA6_RAT (Protein disulfide-isomerase A6 OS=Rattus norvegicus GN=Pdia6 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.134e-11
Identity = 35/87 (40.23%), Postives = 52/87 (59.77%), Query Frame = 2
Query:  146 EVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHP----IIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGE 394
            +V  +TD T+   VLDS    +VEF+APWCG C+ + P       E+ +Q  GK+K   V+   +  +A+RYGI+  PT+ IF+ GE
Sbjct:  161 DVVELTDDTFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAATEVKEQTKGKVKLAAVDATVNQVLASRYGIKGFPTIKIFQKGE 247          
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: PDIA6_MOUSE (Protein disulfide-isomerase A6 OS=Mus musculus GN=Pdia6 PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 1.134e-11
Identity = 35/87 (40.23%), Postives = 52/87 (59.77%), Query Frame = 2
Query:  146 EVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHP----IIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGE 394
            +V  +TD T+   VLDS    +VEF+APWCG C+ + P       E+ +Q  GK+K   V+   +  +A+RYGI+  PT+ IF+ GE
Sbjct:  161 DVVELTDDTFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAATEVKEQTKGKVKLAAVDATVNQVLASRYGIKGFPTIKIFQKGE 247          
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: TRXH_CHLRE (Thioredoxin H-type OS=Chlamydomonas reinhardtii GN=TRXH PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 1.482e-11
Identity = 29/67 (43.28%), Postives = 44/67 (65.67%), Query Frame = 2
Query:  203 PVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKD 403
            P++V+F A WCGPC+MI P+ + LS  Y GK+   KV+ D   ++A   GI ++PT  ++K+G K D
Sbjct:   27 PIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTFHVYKDGVKAD 93          
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: PDIA6_PONAB (Protein disulfide-isomerase A6 OS=Pongo abelii GN=PDIA6 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.482e-11
Identity = 35/87 (40.23%), Postives = 52/87 (59.77%), Query Frame = 2
Query:  146 EVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHP----IIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGE 394
            +V  +TD ++   VLDS    +VEF+APWCG C+ + P       E+ +Q  GK+K   V+   +  +A+RYGIR  PT+ IF+ GE
Sbjct:  161 DVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFPTIKIFQKGE 247          
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: PDIA6_HUMAN (Protein disulfide-isomerase A6 OS=Homo sapiens GN=PDIA6 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.482e-11
Identity = 35/87 (40.23%), Postives = 52/87 (59.77%), Query Frame = 2
Query:  146 EVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHP----IIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGE 394
            +V  +TD ++   VLDS    +VEF+APWCG C+ + P       E+ +Q  GK+K   V+   +  +A+RYGIR  PT+ IF+ GE
Sbjct:  161 DVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFPTIKIFQKGE 247          
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: THIO_COPCM (Thioredoxin OS=Coprinus comatus PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.301e-11
Identity = 28/72 (38.89%), Postives = 48/72 (66.67%), Query Frame = 2
Query:  191 DSGSPVLVEFWAPWCGPCRMIHPIIDELSKQY-VGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKD 403
            +SG  ++++FWA WCGPCR+I PI ++ S++Y    +   KV+ D +  I+    IR++PT  ++K+G+K D
Sbjct:   16 NSGKIIIIDFWATWCGPCRVISPIFEKFSEKYGANNIVFAKVDVDTASDISEEAKIRAMPTFQVYKDGQKID 87          
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: THIOM_RAT (Thioredoxin, mitochondrial OS=Rattus norvegicus GN=Txn2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.311e-11
Identity = 28/77 (36.36%), Postives = 51/77 (66.23%), Query Frame = 2
Query:  173 WQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKD 403
            +Q  V++S +PV+V+F A WCGPC+++ P ++++  +  GK+   KV+ D+   +A  Y + ++PTV+  KNG+  D
Sbjct:   70 FQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIKNGDVVD 146          
The following BLAST results are available for this feature:
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
NGLY1_CAEBR5.092e-1245.21Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagin... [more]
PDIA6_MESAU6.651e-1241.38Protein disulfide-isomerase A6 OS=Mesocricetus aur... [more]
THIO2_DROME1.134e-1147.06Thioredoxin-2 OS=Drosophila melanogaster GN=Trx-2 ... [more]
PDIA6_RAT1.134e-1140.23Protein disulfide-isomerase A6 OS=Rattus norvegicu... [more]
PDIA6_MOUSE1.134e-1140.23Protein disulfide-isomerase A6 OS=Mus musculus GN=... [more]
TRXH_CHLRE1.482e-1143.28Thioredoxin H-type OS=Chlamydomonas reinhardtii GN... [more]
PDIA6_PONAB1.482e-1140.23Protein disulfide-isomerase A6 OS=Pongo abelii GN=... [more]
PDIA6_HUMAN1.482e-1140.23Protein disulfide-isomerase A6 OS=Homo sapiens GN=... [more]
THIO_COPCM3.301e-1138.89Thioredoxin OS=Coprinus comatus PE=1 SV=1[more]
THIOM_RAT4.311e-1136.36Thioredoxin, mitochondrial OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00618 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00618 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623527 ID=BQ623527; Name=BQ623527; organism=Citrus sinensis; type=EST; length=569bp
CTCTGGCCGTCGGAAATTCGCCGAGTTCAAGGGCCTTAAGGTCAGACCTG
TTCGCTCGTTCGGATCGGTGAGTCAGGGTTCGAGTTCGAGCTTCAGACTC
CGTCGCGGTGCGCAAATCGTGTGCGAGGCTCAAGAAACTGCCGTTGAAGT
GCCTGCTGTGACAGATGCAACATGGCAATCACTTGTTCTTGACTCTGGAT
CACCTGTGCTTGTTGAATTCTGGGCTCCATGGTGCGGGCCTTGCCGGATG
ATCCACCCTATTATTGATGAGCTATCAAAGCAATATGTGGGGAAGCTAAA
ATGCTATAAGGTTAATACTGATGAGAGTCCTTCAATTGCTACTAGATATG
GAATTAGGAGCATCCCAACTGTCATGATATTTAAGAATGGCGAGAAGAAA
GATACAGTGGATTGGGTGCTGTTCCTAAATCCACTTTGACCACCAGCATA
GAGAAATTCTTGTAGACATGGTAAGTAAAGGACGCGTTTGCTAGAAACAG
GCTCTCTGTAGCATTTTGTTTGTTTGCCTTGTAGCTTACTATGCCTTGGG
TTAAGATACTTTGCTTTCC
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