BQ623528

Overview
NameBQ623528
Unique NameBQ623528
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length285
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of BQ623528 vs. ExPASy Swiss-Prot
Match: AR8BA_DANRE (ADP-ribosylation factor-like protein 8B-A OS=Danio rerio GN=arl8ba PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.618e-16
Identity = 37/61 (60.66%), Postives = 50/61 (81.97%), Query Frame = 1 
Query:    4 IPLLVLGNKNDLPGAIGVDEIIDKLNLRAVEGREVCVYSISAKNQVNIDMTLEWLIKHSKS 186
            IP+LVLGNK DLP A+   ++I+K+NL A++ RE+C YSIS K + NID+TL+WLI+HSKS
Sbjct:  123 IPVLVLGNKRDLPNALDEKQLIEKMNLAAIQDREICCYSISCKEKDNIDITLQWLIQHSKS 183
[Close]
BLAST of BQ623528 vs. ExPASy Swiss-Prot
Match: ARL8_DROME (ADP-ribosylation factor-like protein 8 OS=Drosophila melanogaster GN=Gie PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.617e-16
Identity = 36/61 (59.02%), Postives = 50/61 (81.97%), Query Frame = 1 
Query:    4 IPLLVLGNKNDLPGAIGVDEIIDKLNLRAVEGREVCVYSISAKNQVNIDMTLEWLIKHSKS 186
            IP+LVLGNK DLPGA+    +I+++NL +++ RE+C YSIS K + NID+TL+WLI+HSKS
Sbjct:  123 IPVLVLGNKRDLPGALDETGLIERMNLSSIQDREICCYSISCKEKDNIDITLQWLIQHSKS 183
[Close]
BLAST of BQ623528 vs. ExPASy Swiss-Prot
Match: ARL8B_MACFA (ADP-ribosylation factor-like protein 8B OS=Macaca fascicularis GN=ARL8B PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.299e-15
Identity = 36/61 (59.02%), Postives = 50/61 (81.97%), Query Frame = 1 
Query:    4 IPLLVLGNKNDLPGAIGVDEIIDKLNLRAVEGREVCVYSISAKNQVNIDMTLEWLIKHSKS 186
            IP+LVLGNK DLP A+   ++I+K+NL A++ RE+C YSIS K + NID+TL+WLI++SKS
Sbjct:  123 IPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQYSKS 183
The following BLAST results are available for this feature:
BLAST of BQ623528 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
AR8BA_DANRE2.618e-1660.66ADP-ribosylation factor-like protein 8B-A OS=Danio... [more]
ARL8_DROME7.617e-1659.02ADP-ribosylation factor-like protein 8 OS=Drosophi... [more]
ARL8B_MACFA1.299e-1559.02ADP-ribosylation factor-like protein 8B OS=Macaca ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00619 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00619 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623528 ID=BQ623528; Name=BQ623528; organism=Citrus sinensis; type=EST; length=285bp
AGCATTCCTTTGCTTGTGTTAGGAAACAAGAACGATCTGCCTGGTGCTAT
TGGTGTTGACGAAATCATTGACAAACTGAACCTTCGTGCTGTTGAAGGTC
GTGAAGTATGCGTCTATTCGATTTCTGCCAAGAACCAAGTCAACATTGAT
ATGACATTGGAGTGGCTCATAAAGCACTCAAAATCTGTTTAATTTGTAAC
ATAGGCAAATCAGCAATCAGGAGTCCTTGAAGATGTGTTTGGAGCACAAT
TCACTTGTACATCCATTAATATTTATCATCATAAA
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