BQ623529

Overview
NameBQ623529
Unique NameBQ623529
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length668
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623529_ssr372 microsatellite BQ623529_ssr372:372..381. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1190 contig Csv1_Contig1190:8..673. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623529 vs. ExPASy Swiss-Prot
Match: PSBP_FRIAG (Oxygen-evolving enhancer protein 2, chloroplastic OS=Fritillaria agrestis GN=PSBP PE=2 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 8.247e-68
Identity = 125/173 (72.25%), Postives = 144/173 (83.24%), Query Frame = 1
Query:   64 HLSTTPARTSSSQRH--VSNIKPTQIVCRAQKQA-VQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGWVRP 573
            H  +TPA TS +  H  V  IKP+Q++CRAQK +   E+  +AVSRRLALT+LIG+AAVG+K++PA+AAYGE+ANVFGK KTNTDFLPY GDGF L IP+KWNPSKE EFPGQVLRYEDNFD  SNVSV +TPT KKSITDYG+PEEFLS VDYLLGKQAYSGKT+SEG   P
Sbjct:   11 HAPSTPATTSRTPSHRLVPTIKPSQLICRAQKSSDTDENSSTAVSRRLALTILIGSAAVGTKIAPANAAYGEAANVFGKAKTNTDFLPYTGDGFNLLIPAKWNPSKEVEFPGQVLRYEDNFDVTSNVSVTVTPTSKKSITDYGTPEEFLSTVDYLLGKQAYSGKTASEGGFDP 183          

HSP 2 Score: 26.1794 bits (56), Expect = 8.247e-68
Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = 3
Query:   30 MASTQCFLHHHAP 68
            MAS+ CFL HHAP
Sbjct:    1 MASSACFLLHHAP 13          
BLAST of BQ623529 vs. ExPASy Swiss-Prot
Match: PSBP_BRAJU (Oxygen-evolving enhancer protein 2, chloroplastic (Fragment) OS=Brassica juncea GN=PSBP PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 5.300e-67
Identity = 104/132 (78.79%), Postives = 122/132 (92.42%), Query Frame = 1
Query:  166 EDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEG 561
            EDD S VSRRLALT+L+GAAAVGSKVSPADAAYGE+ANVFGKPKTNTDF   NGDGF++ +P+KWNPS+E E+PGQVLRYEDNFD+ SN++V++TPTDKKSITDYGSPEEFLS+V+YLLGKQAY G+T+ EG
Sbjct:    1 EDDTSTVSRRLALTLLVGAAAVGSKVSPADAAYGEAANVFGKPKTNTDFTAINGDGFQVQVPAKWNPSREVEYPGQVLRYEDNFDATSNLNVMVTPTDKKSITDYGSPEEFLSQVNYLLGKQAYFGETACEG 132          

HSP 2 Score: 53.1434 bits (126), Expect = 5.300e-67
Identity = 27/40 (67.50%), Postives = 32/40 (80.00%), Query Frame = 2
Query:  560 GGFDPDAVATANILEASVRP----PYYFLSVLTRTADGDE 667
            GGFD +AVATANILE +++     PYY+LSVLTRTAD DE
Sbjct:  132 GGFDNNAVATANILETNIQDVGGKPYYYLSVLTRTADEDE 171          
BLAST of BQ623529 vs. ExPASy Swiss-Prot
Match: PSBP_NARPS (Oxygen-evolving enhancer protein 2, chloroplastic OS=Narcissus pseudonarcissus GN=PSBP PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.818e-64
Identity = 114/183 (62.30%), Postives = 133/183 (72.68%), Query Frame = 1
Query:   34 HQLNASCTTMHLSTTPARTS---SSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGWVRP 573
            H    S  T +LS T + T+     Q H + ++  +  C  +  A+       +SRRLALT+LIG AA+GS+VS ADAAYGESANVFGKPKTNTDF    GDGFK+ IPSKWNPSKE EFPGQVLRYEDNFD+ SNV V++ PTDKKSI DYGSPE+FLS+VDYLLGKQAY GKT SEG   P
Sbjct:    9 HHHAPSPATSNLSRTRSATNRDEQQQEHSARLQSPEADCATENDAL-------LSRRLALTILIGGAALGSRVSAADAAYGESANVFGKPKTNTDFQTVTGDGFKILIPSKWNPSKEVEFPGQVLRYEDNFDTTSNVGVMVNPTDKKSIKDYGSPEQFLSQVDYLLGKQAYFGKTISEGGFEP 184          

HSP 2 Score: 47.3654 bits (111), Expect = 1.818e-64
Identity = 25/40 (62.50%), Postives = 28/40 (70.00%), Query Frame = 2
Query:  560 GGFDPDAVATANILEASV----RPPYYFLSVLTRTADGDE 667
            GGF+P+AV TANILE S        YY + VLTRTADGDE
Sbjct:  180 GGFEPNAVRTANILETSTPVVGGKDYYSIHVLTRTADGDE 219          
BLAST of BQ623529 vs. ExPASy Swiss-Prot
Match: PSBP_WHEAT (Oxygen-evolving enhancer protein 2, chloroplastic OS=Triticum aestivum GN=PSBP PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 1.099e-63
Identity = 110/171 (64.33%), Postives = 133/171 (77.78%), Query Frame = 1
Query:   55 TTMHLSTTPARTSSSQRHVSNIKPTQI-VCRAQKQAVQEDDGSAV-SRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEG 561
            T+  L  + AR ++S R    +  TQ+ VC+AQK      D + V SRR AL++L GAAA+  KVSPA AAYGE+ANVFGK K NTDF+ Y+G+GFKL IP+KWNPSKEREFPGQVLRYEDNFD+ SN+SVII PT KK+ITDYGSPEEFLS+V +LLG+Q+Y GKT SEG
Sbjct:    4 TSCFLHQSTARLAASARPAPAVGRTQLFVCKAQKNDEAASDAAVVTSRRAALSLLAGAAAIAVKVSPAAAAYGEAANVFGKAKKNTDFVAYSGEGFKLMIPAKWNPSKEREFPGQVLRYEDNFDATSNLSVIINPTTKKTITDYGSPEEFLSQVGFLLGQQSYGGKTDSEG 174          

HSP 2 Score: 48.9062 bits (115), Expect = 1.099e-63
Identity = 25/40 (62.50%), Postives = 30/40 (75.00%), Query Frame = 2
Query:  560 GGFDPDAVATANILEASV----RPPYYFLSVLTRTADGDE 667
            GGF+ DAVATAN+LE+S        YY ++VLTRTADGDE
Sbjct:  174 GGFESDAVATANVLESSAPVVDGKQYYSITVLTRTADGDE 213          

HSP 3 Score: 21.9422 bits (45), Expect = 1.099e-63
Identity = 8/9 (88.89%), Postives = 8/9 (88.89%), Query Frame = 3
Query:   30 MASTQCFLH 56
            MAST CFLH
Sbjct:    1 MASTSCFLH 9          
BLAST of BQ623529 vs. ExPASy Swiss-Prot
Match: PSBP_CHLRE (Oxygen-evolving enhancer protein 2, chloroplastic OS=Chlamydomonas reinhardtii GN=PSBP PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.359e-44
Identity = 83/133 (62.41%), Postives = 100/133 (75.19%), Query Frame = 1
Query:  175 GSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGWVRP 573
            GS VSRR AL    GAAA+ S  SPA+AAYG+SANVFGK    + F+PY GDGF L +P+KWNPSKE +FPG +LRYEDNFD+ +N+ VI   TDKK+I D+GS ++FL  V YLLGKQAYSG+T SEG   P
Sbjct:   31 GSDVSRRAALAGFAGAAALVSS-SPANAAYGDSANVFGKVTNKSGFVPYAGDGFALLLPAKWNPSKENDFPGVILRYEDNFDAVNNLVVIAQDTDKKAIADFGSQDKFLESVSYLLGKQAYSGETQSEGGFAP 162          

HSP 2 Score: 33.113 bits (74), Expect = 3.359e-44
Identity = 17/41 (41.46%), Postives = 24/41 (58.54%), Query Frame = 2
Query:  560 GGFDPDAVATANILEASVRPP-----YYFLSVLTRTADGDE 667
            GGF P+ V+ A++L+ S         YY   +L R+ADGDE
Sbjct:  158 GGFAPNRVSAASLLDVSTTTDKKGKTYYKYELLVRSADGDE 198          
BLAST of BQ623529 vs. ExPASy Swiss-Prot
Match: PSBP2_ARATH (Putative oxygen-evolving enhancer protein 2-2 OS=Arabidopsis thaliana GN=PSBP2 PE=5 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 1.667e-22
Identity = 33/40 (82.50%), Postives = 39/40 (97.50%), Query Frame = 1
Query:  442 IITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEG 561
            +ITPTDKKSITDYGSPE+FLS+V+YLLGKQAY G+T+SEG
Sbjct:    1 MITPTDKKSITDYGSPEQFLSQVNYLLGKQAYVGETASEG 40          

HSP 2 Score: 53.5286 bits (127), Expect = 1.667e-22
Identity = 28/40 (70.00%), Postives = 31/40 (77.50%), Query Frame = 2
Query:  560 GGFDPDAVATANILEASVRP----PYYFLSVLTRTADGDE 667
            GGFD +AVATANILE S +      YY+LSVLTRTADGDE
Sbjct:   40 GGFDANAVATANILETSTQEIGGKEYYYLSVLTRTADGDE 79          
The following BLAST results are available for this feature:
BLAST of BQ623529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
PSBP_FRIAG8.247e-6872.25Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_BRAJU5.300e-6778.79Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_NARPS1.818e-6462.30Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_WHEAT1.099e-6364.33Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_CHLRE3.359e-4462.41Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP2_ARATH1.667e-2282.50Putative oxygen-evolving enhancer protein 2-2 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00620 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00620 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623529 ID=BQ623529; Name=BQ623529; organism=Citrus sinensis; type=EST; length=668bp
GAATAAAGAGGAGAGAGCGAAAAGAAAAAATGGCATCAACTCAATGCTTC
TTGCACCACCATGCACCTCTCTACTACACCAGCAAGAACATCATCATCTC
AGCGCCACGTGTCGAACATCAAGCCCACCCAGATTGTCTGCCGTGCGCAG
AAGCAAGCTGTCCAAGAAGATGACGGCAGCGCCGTCTCCCGCCGTTTGGC
TCTGACGGTGCTCATTGGTGCTGCTGCCGTCGGCTCCAAGGTCTCTCCTG
CCGACGCTGCCTACGGTGAATCAGCCAATGTGTTTGGTAAGCCAAAGACC
AACACTGACTTCTTGCCATACAATGGAGATGGATTCAAGCTGTCGATTCC
CTCAAAATGGAACCCCAGCAAAGAGAGAGAGTTCCCGGGTCAGGTTCTTA
GATACGAAGACAACTTCGATTCCAACAGCAATGTCTCCGTCATAATCACC
CCAACTGACAAGAAATCCATCACTGACTACGGTTCCCCCGAGGAATTCCT
CAGTAAGGTGGACTACTTGCTGGGAAAACAAGCCTATTCCGGCAAAACTT
CGTCTGAGGGGTGGGTTCGACCCTGATGCTGTGGCAACAGCTAACATCTT
GGAGGCTTCAGTCCGACCACCATACTACTTCTTGTCTGTATTAACAAGAA
CTGCTGATGGAGATGAAG
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