BQ623531

Overview
NameBQ623531
Unique NameBQ623531
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length693
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623531_ssr40 microsatellite BQ623531_ssr40:40..55. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of BQ623531 vs. ExPASy Swiss-Prot
Match: GLP1_BRANA (Germin-like protein 1 OS=Brassica napus GN=GER1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.460e-15
Identity = 44/92 (47.83%), Postives = 50/92 (54.35%), Query Frame = 3
Query:  153 LQDICVAIDEPKNAVFVNGKFCKDPKLAKAQDFFLSGLDKPGNTANRLGFSVTNANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEI 428
            +QD CVA    K A    G  C  P   KA DF  S L  PGNT N +  +VT   V Q P LN LGIS  R+D AP G  P HTHP A+E+
Sbjct:   19 VQDFCVA--NLKRAETPAGYPCIRPIHVKASDFVFS-LGTPGNTTNIISAAVTPGFVAQFPALNGLGISTARLDLAPKGVIPMHTHPGASEV 107          

HSP 2 Score: 30.8018 bits (68), Expect = 2.460e-15
Identity = 12/29 (41.38%), Postives = 18/29 (62.07%), Query Frame = 2
Query:  488 NTLIAKVLNKGDVFVFPIGMIHFQFTSEK 574
            N++  + L  G V VFP G++HFQ  + K
Sbjct:  124 NSVYVQTLKPGQVMVFPQGLLHFQINAGK 152          
BLAST of BQ623531 vs. ExPASy Swiss-Prot
Match: GL31_ORYSJ (Germin-like protein 3-1 OS=Oryza sativa subsp. japonica GN=Os03g0179000 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.181e-14
Identity = 46/113 (40.71%), Postives = 57/113 (50.44%), Query Frame = 3
Query:  141 DPSPLQDICVAIDEPKNAV---FVNGKFCKDPKLAKAQDFFLSGLDKPGNTANRL-GFSVT-NANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEIPGGPGGNTLCWF 464
            DP  L D CVA      A     +NG  C DP LA+A  F  S L +  N A  L GF+ T  +    +PG N  G++  RID AP G  PPH+HPRA+E      G+ L  F
Sbjct:   23 DPDLLFDYCVADTAAATAAGAFHLNGLACIDPALARADHFATSALSRATNPAATLYGFNATLTSPAASLPGANAQGLAMARIDLAPGGMAPPHSHPRASEAALVLSGSVLVGF 135          

HSP 2 Score: 27.7202 bits (60), Expect = 1.181e-14
Identity = 10/26 (38.46%), Postives = 16/26 (61.54%), Query Frame = 2
Query:  494 LIAKVLNKGDVFVFPIGMIHFQFTSE 571
            L  ++L  G+ FVFP  M+HF +  +
Sbjct:  142 LYTQLLRAGEAFVFPRAMVHFLYNMD 167          
BLAST of BQ623531 vs. ExPASy Swiss-Prot
Match: GL813_ORYSJ (Germin-like protein 8-13 OS=Oryza sativa subsp. japonica GN=Os08g0459700 PE=2 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 5.691e-14
Identity = 36/91 (39.56%), Postives = 48/91 (52.75%), Query Frame = 3
Query:  156 QDICVAIDEPKNAVFVNGKFCKDPKLAKAQDFFLSGLDKPGNTANRLGFSVTNANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEI 428
            QD CVA + P  A   +G  C+      A DF+   L +PG        S+ +A V+Q P +N LGISA R+D  P G  P HTHP  +E+
Sbjct:   29 QDFCVA-NLPLGADTPSGYQCRPAATVTAADFYSGALARPGILIRPFNTSLASAFVQQYPAVNGLGISASRVDILPGGVVPLHTHPAGSEL 118          

HSP 2 Score: 33.4982 bits (75), Expect = 5.691e-14
Identity = 14/35 (40.00%), Postives = 26/35 (74.29%), Query Frame = 2
Query:  464 FVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFTS 568
            F++S+  +N +  K ++KG +FVFP G++HFQ+ +
Sbjct:  130 FISSS--DNKVYYKEVSKGGMFVFPQGLLHFQYNT 162          
BLAST of BQ623531 vs. ExPASy Swiss-Prot
Match: GL814_ORYSJ (Germin-like protein 8-14 OS=Oryza sativa subsp. japonica GN=GER5 PE=1 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 5.697e-14
Identity = 43/95 (45.26%), Postives = 50/95 (52.63%), Query Frame = 3
Query:  156 QDICVA----IDEPKNAVFVNGKFCKDPKLAKAQDFFLSGLDKPGNTANRLGFSVTNANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEI 428
            QD CVA     D P       G  CK      A DF   GL   GNT+N +  +VT A V Q PG+N LGISA R+D A  G  P HTHP A+E+
Sbjct:   26 QDFCVADLTCSDTPA------GYPCKAS--VGAGDFAYHGLAAAGNTSNLIKAAVTPAFVGQFPGVNGLGISAARLDIAVGGVVPLHTHPAASEL 112          

HSP 2 Score: 35.4242 bits (80), Expect = 5.697e-14
Identity = 14/35 (40.00%), Postives = 25/35 (71.43%), Query Frame = 2
Query:  464 FVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFTS 568
            F+TS+  +NT+  + L  GD+ VFP G++H+Q+ +
Sbjct:  124 FITSS--SNTVYTRTLYAGDIMVFPQGLLHYQYNA 156          
The following BLAST results are available for this feature:
BLAST of BQ623531 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
GLP1_BRANA2.460e-1547.83Germin-like protein 1 OS=Brassica napus GN=GER1 PE... [more]
GL31_ORYSJ1.181e-1440.71Germin-like protein 3-1 OS=Oryza sativa subsp. jap... [more]
GL813_ORYSJ5.691e-1439.56Germin-like protein 8-13 OS=Oryza sativa subsp. ja... [more]
GL814_ORYSJ5.697e-1445.26Germin-like protein 8-14 OS=Oryza sativa subsp. ja... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00622 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00622 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623531 ID=BQ623531; Name=BQ623531; organism=Citrus sinensis; type=EST; length=693bp
AATAAGTTCAGAAATTGATTAAACAGAGTGAGATCCTACAGCTAGCTAGC
TAGCTAATTAAACACACAATGAAAACCAGTGTTCAATTTCTTAAAGGTTT
TGCTCTCTTGGTTTTAGCTTCTTCGTTGGCCTCTGCCTTTGATCCTAGTC
CTCTTCAGGATATCTGTGTAGCCATCGATGAGCCCAAGAACGCAGTTTTT
GTTAACGGGAAGTTCTGCAAGGACCCCAAGCTTGCTAAAGCTCAAGATTT
CTTCTTATCAGGGCTAGACAAGCCTGGAAACACAGCAAACCGTCTTGGTT
TTAGTGTGACAAATGCAAATGTTGAGCAAATTCCAGGACTCAACACCCTT
GGCATATCAGCAGTCCGTATTGACTATGCACCATACGGCCAAAACCCACC
TCACACGCACCCTCGTGCCACTGAGATCCCTGGTGGTCCTGGAGGGAACA
CTTTATGTTGGTTTTTGTGACATCAAACCAGCTGAATAACACACTCATTG
CAAAAGTTCTGAACAAGGGAGATGTTTTTGTGTTTCCGATTGGCATGATT
CACTTCCAATTCACATCGGAAAAACAAATGCAGTTGCAATTGCTGCTCTA
AGCAGCCAGTTCCCTGGTGTCATTACCATAGCAAACACGGGCTTCGGAGC
CAATCCTCCGATCAATCCTGATTTTCTTGCCAGGCGTCCAGTT
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