BQ623534

Overview
NameBQ623534
Unique NameBQ623534
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12918 contig Csv1_Contig12918:1092..1757. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623534 vs. ExPASy Swiss-Prot
Match: VPS1_SCHPO (Vacuolar protein sorting-associated protein 1 OS=Schizosaccharomyces pombe GN=vps1 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.809e-12
Identity = 31/101 (30.69%), Postives = 61/101 (60.40%), Query Frame = 3 
Query:   90 LREPPTILRPSESHSEQENVEIAVTKLLLRSYYDIVRKNIEDSIPKAVMHFLVNHTKRELHNVFIKKLYRENLFEEMLQEPEEVAMKRKRTRDTLRVLQQA 392
            +  PP +LR S + S++E  +  V KLL+ SY++IV++ + D +PK++   ++ ++K  + +  +++LY+   F+++LQE E    +RK     +  L QA
Sbjct:  571 MEPPPPVLRASTTLSDREKTDTEVIKLLIMSYFNIVKRTLADMVPKSISLKMIKYSKEHIQHELLEQLYKSQAFDKLLQESEVTVQRRKECEQMVESLLQA 671
[Close]
BLAST of BQ623534 vs. ExPASy Swiss-Prot
Match: VPS1_YEAST (Vacuolar protein sorting-associated protein 1 OS=Saccharomyces cerevisiae GN=VPS1 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.086e-12
Identity = 35/101 (34.65%), Postives = 61/101 (60.40%), Query Frame = 3 
Query:   90 LREPPTILRPSESHSEQENVEIAVTKLLLRSYYDIVRKNIEDSIPKAVMHFLVNHTKRELHNVFIKKLYRENLFEEMLQEPEEVAMKRKRTRDTLRVLQQA 392
            L  PP +L+ +   +E+E +E  V KLL+ SY+ IV++ I D IPKA+M  L+  +K ++  V ++KLY +   EE+ +E +    +RK  +  + +L+ A
Sbjct:  597 LESPPPVLKATGQMTERETMETEVIKLLISSYFSIVKRTIADIIPKALMLKLIVKSKTDIQKVLLEKLYGKQDIEELTKENDITIQRRKECKKMVEILRNA 697
The following BLAST results are available for this feature:
BLAST of BQ623534 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
VPS1_SCHPO1.809e-1230.69Vacuolar protein sorting-associated protein 1 OS=S... [more]
VPS1_YEAST3.086e-1234.65Vacuolar protein sorting-associated protein 1 OS=S... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00625 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00625 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623534 ID=BQ623534; Name=BQ623534; organism=Citrus sinensis; type=EST; length=667bp
ACCGTGTGTCTGCTGGCAAGGAGAGCGTAACAAACAAGCCATTCAGTGAG
CCTGTCCAGAACATGGAGCATGCTTTTGCTATGATCCATTTGAGAGAGCC
TCCAACCATCTTGAGGCCCTCAGAAAGCCATTCAGAACAGGAGAATGTTG
AAATCGCAGTGACAAAATTGCTGTTGAGATCATACTATGATATTGTTCGG
AAGAATATCGAGGACTCAATACCTAAAGCAGTTATGCATTTCCTGGTGAA
TCATACAAAACGTGAGCTGCATAATGTCTTCATTAAAAAGCTTTACAGAG
AAAACCTGTTTGAAGAGATGCTTCAGGAGCCTGAGGAGGTAGCAATGAAG
AGAAAGCGTACACGAGACACACTCCGAGTTCTTCAGCAAGCTTTTCGGAC
ATTGGATGAATTGCCATTAGAAGCTGATTCAGTTGAGAGGGGATACAATA
TGAGCGCTGATCCCACAGGACTGCCAAAGATCCATGGATGGCCGACGTCG
TCTATGTATACTACCAGCAGTGGTTCAAATGATTCCTATACAGCTTCTCC
AAAAAACCCAAAATCCAGGAAGTCGTCTCACTCAGGGGAGCTACAATCAC
ATCTCTTTTCTAACGCCGATTCTAACGGAAGTGGGTCGTATGTACATGCC
GGGTCTCTATCCGACAG
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