BQ623580

Overview
NameBQ623580
Unique NameBQ623580
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length301
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623580 vs. ExPASy Swiss-Prot
Match: MDHM_MACFA (Malate dehydrogenase, mitochondrial OS=Macaca fascicularis GN=MDH2 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.197e-16
Identity = 44/88 (50.00%), Postives = 52/88 (59.09%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVETKAGKGSAT 268
            YN  K+FGVTTLD+VRA TF                   HAG TI+PL SQ TPK +   + + ALT R Q+ GTEVV+ KAG GSAT
Sbjct:  161 YNPSKIFGVTTLDIVRANTFVAELKGLDPARVNVPVIGGHAGKTIIPLISQCTPKVDFPQDQLTALTGRIQEAGTEVVKAKAGAGSAT 248          
BLAST of BQ623580 vs. ExPASy Swiss-Prot
Match: MDHM_HUMAN (Malate dehydrogenase, mitochondrial OS=Homo sapiens GN=MDH2 PE=1 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 1.197e-16
Identity = 44/88 (50.00%), Postives = 52/88 (59.09%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVETKAGKGSAT 268
            YN  K+FGVTTLD+VRA TF                   HAG TI+PL SQ TPK +   + + ALT R Q+ GTEVV+ KAG GSAT
Sbjct:  161 YNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVPVIGGHAGKTIIPLISQCTPKVDFPQDQLTALTGRIQEAGTEVVKAKAGAGSAT 248          
BLAST of BQ623580 vs. ExPASy Swiss-Prot
Match: MDH_VIBVY (Malate dehydrogenase OS=Vibrio vulnificus (strain YJ016) GN=mdh PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.564e-16
Identity = 47/98 (47.96%), Postives = 58/98 (59.18%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVETKAGKGSATFVNGLCRSHF 298
            Y+++KLFGVTTLDV+R++TF                   H+G+TILPL SQ       +DE+I ALTKR Q+ GTEVVE KAG GSAT   G     F
Sbjct:  138 YDKRKLFGVTTLDVIRSETFVAELKGQDPGEVRVPVIGGHSGVTILPLLSQVEG-VEFSDEEIAALTKRIQNAGTEVVEAKAGGGSATLSMGQAACRF 234          
BLAST of BQ623580 vs. ExPASy Swiss-Prot
Match: MDH_VIBVU (Malate dehydrogenase OS=Vibrio vulnificus GN=mdh PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.564e-16
Identity = 47/98 (47.96%), Postives = 58/98 (59.18%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVETKAGKGSATFVNGLCRSHF 298
            Y+++KLFGVTTLDV+R++TF                   H+G+TILPL SQ       +DE+I ALTKR Q+ GTEVVE KAG GSAT   G     F
Sbjct:  138 YDKRKLFGVTTLDVIRSETFVAELKGQDPGEVRVPVIGGHSGVTILPLLSQVEG-VEFSDEEIAALTKRIQNAGTEVVEAKAGGGSATLSMGQAACRF 234          
BLAST of BQ623580 vs. ExPASy Swiss-Prot
Match: MDH_ENTS8 (Malate dehydrogenase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=mdh PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.564e-16
Identity = 45/98 (45.92%), Postives = 57/98 (58.16%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVETKAGKGSATFVNGLCRSHF 298
            Y++ KLFGVTTLD++R+ TF                   H+G+TILPL SQ  P  N  D+++  LTKR Q+ GTEVVE KAG GSAT   G   + F
Sbjct:  138 YDKNKLFGVTTLDIIRSNTFVAELKGKKPAELDVPVIGGHSGVTILPLLSQI-PGVNFTDQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARF 234          
BLAST of BQ623580 vs. ExPASy Swiss-Prot
Match: MDH_EDWI9 (Malate dehydrogenase OS=Edwardsiella ictaluri (strain 93-146) GN=mdh PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.564e-16
Identity = 45/98 (45.92%), Postives = 57/98 (58.16%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVETKAGKGSATFVNGLCRSHF 298
            YN  KLFGVTTLD++R+ TF                   H+G+TILPL SQ  P  +L++ ++  LTKR Q+ GTEVVE KAG GSAT   G   + F
Sbjct:  138 YNPNKLFGVTTLDIIRSNTFVGELKHLDPATLDIPVIGGHSGVTILPLLSQI-PGVSLSEREVAELTKRIQNAGTEVVEAKAGGGSATLAMGQAAARF 234          
BLAST of BQ623580 vs. ExPASy Swiss-Prot
Match: MDH_VIBCH (Malate dehydrogenase OS=Vibrio cholerae GN=mdh PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 2.043e-16
Identity = 46/98 (46.94%), Postives = 58/98 (59.18%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVETKAGKGSATFVNGLCRSHF 298
            Y+++KLFGVTTLDV+R++TF                   H+G+TILPL SQ     +  DE++ ALTKR Q+ GTEVVE KAG GSAT   G     F
Sbjct:  138 YDKRKLFGVTTLDVIRSETFVAALKDKDPGQVRVPVIGGHSGVTILPLLSQVEG-VSFTDEEVAALTKRIQNAGTEVVEAKAGGGSATLSMGQAACRF 234          
BLAST of BQ623580 vs. ExPASy Swiss-Prot
Match: MDHG2_ARATH (Probable malate dehydrogenase, glyoxysomal OS=Arabidopsis thaliana GN=At2g22780 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.043e-16
Identity = 45/89 (50.56%), Postives = 53/89 (59.55%), Query Frame = 2
Query:    2 TYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVETKAGKGSAT 268
            T++ KKL GVT LDVVRA TF                   HAG+TILPL SQ  P  +   ++I+ LT R Q+GGTEVVE KAG GSAT
Sbjct:  178 TFDPKKLMGVTMLDVVRANTFVAEVMSLDPREVEVPVVGGHAGVTILPLLSQVKPPCSFTQKEIEYLTDRIQNGGTEVVEAKAGAGSAT 266          
BLAST of BQ623580 vs. ExPASy Swiss-Prot
Match: MDH_ALTMD (Malate dehydrogenase OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=mdh PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.668e-16
Identity = 46/99 (46.46%), Postives = 56/99 (56.57%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVETKAGKGSATFVNGLCRSHFC 301
            Y++ KLFGVTTLDV+RA+TF                   H+G TILPL SQ        DE++ +LT R Q+ GTEVVE KAG GSAT   G   + FC
Sbjct:  138 YDKNKLFGVTTLDVIRAETFVAELKDVDVSSVHVPVIGGHSGTTILPLLSQVEG-VEFTDEEVSSLTTRIQNAGTEVVEAKAGGGSATLSMGQAAARFC 235          
BLAST of BQ623580 vs. ExPASy Swiss-Prot
Match: MDH_KLEP7 (Malate dehydrogenase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=mdh PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.484e-16
Identity = 45/98 (45.92%), Postives = 58/98 (59.18%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVETKAGKGSATFVNGLCRSHF 298
            Y++ KLFGVTTLD++R+ TF                   H+G+TILPL SQ  P  + +D++I  LTKR Q+ GTEVVE KAG GSAT   G   + F
Sbjct:  138 YDKNKLFGVTTLDIIRSNTFVAELKGKSATEVEVPVIGGHSGVTILPLLSQI-PGVSFSDQEIADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARF 234          
The following BLAST results are available for this feature:
BLAST of BQ623580 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 151
Match NameE-valueIdentityDescription
MDHM_MACFA1.197e-1650.00Malate dehydrogenase, mitochondrial OS=Macaca fasc... [more]
MDHM_HUMAN1.197e-1650.00Malate dehydrogenase, mitochondrial OS=Homo sapien... [more]
MDH_VIBVY1.564e-1647.96Malate dehydrogenase OS=Vibrio vulnificus (strain ... [more]
MDH_VIBVU1.564e-1647.96Malate dehydrogenase OS=Vibrio vulnificus GN=mdh P... [more]
MDH_ENTS81.564e-1645.92Malate dehydrogenase OS=Enterobacter sakazakii (st... [more]
MDH_EDWI91.564e-1645.92Malate dehydrogenase OS=Edwardsiella ictaluri (str... [more]
MDH_VIBCH2.043e-1646.94Malate dehydrogenase OS=Vibrio cholerae GN=mdh PE=... [more]
MDHG2_ARATH2.043e-1650.56Probable malate dehydrogenase, glyoxysomal OS=Arab... [more]
MDH_ALTMD2.668e-1646.46Malate dehydrogenase OS=Alteromonas macleodii (str... [more]
MDH_KLEP73.484e-1645.92Malate dehydrogenase OS=Klebsiella pneumoniae subs... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00671 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00671 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623580 ID=BQ623580; Name=BQ623580; organism=Citrus sinensis; type=EST; length=301bp
GACATACAATGAGAAGAAGCTGTTTGGTGTGACCACTCTTGATGTGGTTA
GGGCTAAGACTTTCTATGCTGGAAAGGCCAATGTTAATGTTGCAGAGGTT
AATGTGCCTGTTGTTGGTGGTCATGCTGGTATAACAATTCTCCCGCTATT
TTCTCAGGCCACACCAAAGGCCAATTTGGCAGATGAAGATATTAAGGCTC
TTACAAAGAGAACCCAAGATGGTGGGACAGAAGTTGTGGAAACAAAGGCT
GGAAAGGGTTCTGCAACATTTGTCAATGGCTTATGCAGGAGCCATTTTTG
C
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