BQ623619

Overview
NameBQ623619
Unique NameBQ623619
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length567
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623619 vs. ExPASy Swiss-Prot
Match: TNNC2_BALNU (Troponin C, isoform 2 OS=Balanus nubilis PE=1 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 3.244e-27
Identity = 60/149 (40.27%), Postives = 97/149 (65.10%), Query Frame = 2
Query:   41 MADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSE---EELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 478
            M D+L  DQI+  K+AF  FD +  G I    + T++R +GQ      L+++I+EVDADG+G ++F EF+ L A+ + D D+E   +ELKEAFR++DK   G+I  + L+ ++  L E L  E++D +I E D DG G ++++EF+++M
Sbjct:    1 MMDELDKDQIAMLKKAFDGFDHEKKGAINCDVVATILRMMGQAYNAQTLKELIDEVDADGSGMLEFEEFVTLAAKFIIDDDAEAMAKELKEAFRLYDKAGKGYIPTSALKDILKELDETLNAEDLDNIIGEIDTDGSGTVDFDEFMEMM 149          
BLAST of BQ623619 vs. ExPASy Swiss-Prot
Match: ML12B_BOVIN (Myosin regulatory light chain 12B OS=Bos taurus GN=MYL12B PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.244e-27
Identity = 59/138 (42.75%), Postives = 89/138 (64.49%), Query Frame = 2
Query:   65 QISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 478
            QI EFKEAF++ D++ DG I  ++L  ++ SLG+NPT+A L+ M+NE      G I+F  FL +   K+  TD E+ ++ AF  FD++  G I    LR ++T +G++ TDEEVDE+ REA +D  G  NY EF +++
Sbjct:   29 QIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYLEAMMNEAP----GPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEFTRIL 162          
BLAST of BQ623619 vs. ExPASy Swiss-Prot
Match: CABP5_BOVIN (Calcium-binding protein 5 OS=Bos taurus GN=CABP5 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.244e-27
Identity = 61/147 (41.50%), Postives = 99/147 (67.35%), Query Frame = 2
Query:   53 LTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDS----EEELKEAFRVFDKDQNGFISAAELRHVMTN-LGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 478
            L  D+I E +EAF  FDKD DG I+ K+LG +MR++G  PTE EL ++  ++  +  G +DF +F+ LM  K+    +     +E+++AF+ FD + +G I+  EL+  M   LG+KLT +E+ E+++EAD++GDG +++EEFVK+M
Sbjct:   25 LGPDEIEELREAFLEFDKDRDGFISCKDLGNLMRTMGYMPTEMELIELGQQIRMNLGGRVDFDDFVELMTPKLLAETAGMIGVQEMRDAFKEFDANGDGEITLGELQQAMQRLLGDKLTSQEISEVVQEADINGDGTVDFEEFVKMM 171          
BLAST of BQ623619 vs. ExPASy Swiss-Prot
Match: CML25_ARATH (Probable calcium-binding protein CML25 OS=Arabidopsis thaliana GN=CML25 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.237e-27
Identity = 65/139 (46.76%), Postives = 88/139 (63.31%), Query Frame = 2
Query:   65 QISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 481
            +I E +  F  FD +GDG I++KELG +M SLG    E EL+  I E+D  G+G I+F EF+ L  + M   D  E LK+AF V+D D NG ISA EL  V+ +LG++ +  E  +MI   D DGDG I++EEF K+MM
Sbjct:   34 EIRELEAVFKKFDVNGDGKISSKELGAIMTSLGHEVPEEELEKAITEIDRKGDGYINFEEFVELNTKGMDQNDVLENLKDAFSVYDIDGNGSISAEELHEVLRSLGDECSIAECRKMIGGVDKDGDGTIDFEEF-KIMM 171          

HSP 2 Score: 66.6254 bits (161), Expect = 9.482e-11
Identity = 33/67 (49.25%), Postives = 46/67 (68.66%), Query Frame = 2
Query:   59 DDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLM 259
            +D +   K+AFS++D DG+G I+ +EL  V+RSLG   + AE + MI  VD DG+GTIDF EF  +M
Sbjct:  105 NDVLENLKDAFSVYDIDGNGSISAEELHEVLRSLGDECSIAECRKMIGGVDKDGDGTIDFEEFKIMM 171          
BLAST of BQ623619 vs. ExPASy Swiss-Prot
Match: ML12B_RAT (Myosin regulatory light chain 12B OS=Rattus norvegicus GN=Myl12b PE=2 SV=3)

HSP 1 Score: 120.553 bits (301), Expect = 5.533e-27
Identity = 59/138 (42.75%), Postives = 88/138 (63.77%), Query Frame = 2
Query:   65 QISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 478
            QI EFKEAF++ D++ DG I  ++L  ++ SLG+NPT+A L  M+NE      G I+F  FL +   K+  TD E+ ++ AF  FD++  G I    LR ++T +G++ TDEEVDE+ REA +D  G  NY EF +++
Sbjct:   30 QIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYLDAMMNEAP----GRINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEFTRIL 163          
BLAST of BQ623619 vs. ExPASy Swiss-Prot
Match: ML12B_MOUSE (Myosin regulatory light chain 12B OS=Mus musculus GN=Myl12b PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 5.533e-27
Identity = 59/138 (42.75%), Postives = 88/138 (63.77%), Query Frame = 2
Query:   65 QISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 478
            QI EFKEAF++ D++ DG I  ++L  ++ SLG+NPT+A L  M+NE      G I+F  FL +   K+  TD E+ ++ AF  FD++  G I    LR ++T +G++ TDEEVDE+ REA +D  G  NY EF +++
Sbjct:   30 QIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYLDAMMNEAP----GPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEFTRIL 163          
BLAST of BQ623619 vs. ExPASy Swiss-Prot
Match: ML12B_HUMAN (Myosin regulatory light chain 12B OS=Homo sapiens GN=MYL12B PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 5.533e-27
Identity = 59/138 (42.75%), Postives = 88/138 (63.77%), Query Frame = 2
Query:   65 QISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 478
            QI EFKEAF++ D++ DG I  ++L  ++ SLG+NPT+A L  M+NE      G I+F  FL +   K+  TD E+ ++ AF  FD++  G I    LR ++T +G++ TDEEVDE+ REA +D  G  NY EF +++
Sbjct:   30 QIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYLDAMMNEAP----GPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEFTRIL 163          
BLAST of BQ623619 vs. ExPASy Swiss-Prot
Match: CALL4_MOUSE (Calmodulin-like protein 4 OS=Mus musculus GN=Calml4 PE=2 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 7.227e-27
Identity = 60/144 (41.67%), Postives = 92/144 (63.89%), Query Frame = 2
Query:   41 MADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVK 472
            MA  L+ DQI+E+KE FSL+DK   G I   +L   MR LG +PT  E+Q  +     D NG +DF  FL +M  ++K  D ++E+  A  + DK++ G+I A+ELR  +  LGEKLT +EVD++ +EA ++ +GQ+ Y+ F++
Sbjct:    1 MAKFLSQDQINEYKECFSLYDKQQRGKIKATDLLVSMRCLGASPTPGEVQRHLQTHGIDKNGELDFSTFLTIMHMQIKQEDPKKEILLAMLMADKEKKGYIMASELRSKLMKLGEKLTHKEVDDLFKEAGIEPNGQVKYDTFIQ 144          
BLAST of BQ623619 vs. ExPASy Swiss-Prot
Match: CETN3_MOUSE (Centrin-3 OS=Mus musculus GN=Cetn3 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 9.439e-27
Identity = 63/155 (40.65%), Postives = 95/155 (61.29%), Query Frame = 2
Query:   14 VEKTNGRRKMADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 478
            V+KT  +RK   +L+++Q  E K+AF LFD D D  I   EL   MR+LG +  +A++  ++ + D +  G I F +F  ++   + + D  EE+ +AF++FD D +G IS   LR V   LGE ++DEE+  MI E D DGDG+IN EEF+ +M
Sbjct:   11 VDKT--KRKKRRELSEEQKQEIKDAFELFDTDKDQAIDYHELKVAMRALGFDVKKADVLKILKDYDREATGKITFEDFNEVVTDWILERDPHEEILKAFKLFDDDDSGKISLRNLRRVARELGENMSDEELRAMIEEFDKDGDGEINQEEFIAIM 163          
BLAST of BQ623619 vs. ExPASy Swiss-Prot
Match: CETN3_HUMAN (Centrin-3 OS=Homo sapiens GN=CETN3 PE=2 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 9.439e-27
Identity = 63/155 (40.65%), Postives = 95/155 (61.29%), Query Frame = 2
Query:   14 VEKTNGRRKMADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 478
            V+KT  +RK   +L+++Q  E K+AF LFD D D  I   EL   MR+LG +  +A++  ++ + D +  G I F +F  ++   + + D  EE+ +AF++FD D +G IS   LR V   LGE ++DEE+  MI E D DGDG+IN EEF+ +M
Sbjct:   11 VDKT--KRKKRRELSEEQKQEIKDAFELFDTDKDEAIDYHELKVAMRALGFDVKKADVLKILKDYDREATGKITFEDFNEVVTDWILERDPHEEILKAFKLFDDDDSGKISLRNLRRVARELGENMSDEELRAMIEEFDKDGDGEINQEEFIAIM 163          
The following BLAST results are available for this feature:
BLAST of BQ623619 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 487
Match NameE-valueIdentityDescription
TNNC2_BALNU3.244e-2740.27Troponin C, isoform 2 OS=Balanus nubilis PE=1 SV=2[more]
ML12B_BOVIN3.244e-2742.75Myosin regulatory light chain 12B OS=Bos taurus GN... [more]
CABP5_BOVIN3.244e-2741.50Calcium-binding protein 5 OS=Bos taurus GN=CABP5 P... [more]
CML25_ARATH4.237e-2746.76Probable calcium-binding protein CML25 OS=Arabidop... [more]
ML12B_RAT5.533e-2742.75Myosin regulatory light chain 12B OS=Rattus norveg... [more]
ML12B_MOUSE5.533e-2742.75Myosin regulatory light chain 12B OS=Mus musculus ... [more]
ML12B_HUMAN5.533e-2742.75Myosin regulatory light chain 12B OS=Homo sapiens ... [more]
CALL4_MOUSE7.227e-2741.67Calmodulin-like protein 4 OS=Mus musculus GN=Calml... [more]
CETN3_MOUSE9.439e-2740.65Centrin-3 OS=Mus musculus GN=Cetn3 PE=2 SV=1[more]
CETN3_HUMAN9.439e-2740.65Centrin-3 OS=Homo sapiens GN=CETN3 PE=2 SV=2[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00710 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00710 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623619 ID=BQ623619; Name=BQ623619; organism=Citrus sinensis; type=EST; length=567bp
TACCTATTTCTGAGTTGAAAAAACAAACGGAAGAAGAAAAATGGCGGATC
AGCTCACGGACGATCAGATCTCTGAGTTCAAAGAGGCCTTCAGCTTGTTT
GACAAGGATGGCGACGGTTGCATTACCACCAAGGAGCTTGGCACTGTTAT
GAGGTCACTGGGTCAGAACCCCACTGAGGCTGAGCTCCAGGACATGATCA
ATGAAGTGGATGCTGATGGTAATGGAACTATTGATTTTCCTGAATTCCTA
AACCTCATGGCCAGGAAGATGAAGGATACCGACTCTGAGGAGGAGCTGAA
AGAGGCCTTCCGGGTTTTCGACAAGGATCAGAATGGTTTCATCTCAGCTG
CTGAGCTGCGCCATGTGATGACAAACCTAGGAGAGAAACTTACTGATGAA
GAAGTTGATGAGATGATAAGGGAAGCTGATGTTGATGGTGATGGCCAGAT
AAATTATGAGGAATTTGTCAAGGTTATGATGGCCAAGTACTGACCCCACA
CCACCAATACTTATAAAATGGGTTGACTAAATTATAAAGGGATTCCTAGT
ATTTCTCTTTTACATTT
back to top