BQ623619

Overview
NameBQ623619
Unique NameBQ623619
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length567
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623619 vs. ExPASy Swiss-Prot
Match: MYL3_PONAB (Myosin light chain 3 OS=Pongo abelii GN=MYL3 PE=2 SV=3)

HSP 1 Score: 114.775 bits (286), Expect = 3.036e-25
Identity = 67/155 (43.23%), Postives = 100/155 (64.52%), Query Frame = 2
Query:   38 KMADQLTDDQISEFKEAFSLFDKDG--DGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGT--IDFPEFLNLMAR--KMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 484
            K+  + T +QI EFKEAF LFD+    +  IT  + G V+R+LGQNPT+AE+  ++ +   +   T  +DF  FL ++    K KDT + E+  E  RVFDK+ NG +  AELRHV+  LGE+LT++EV++++   + D +G INYE FVK +M+
Sbjct:   41 KIKIEFTPEQIEEFKEAFMLFDRTPKCEMKITYGQCGDVLRALGQNPTQAEVLRVLGKPRQEELNTKMMDFETFLPMLQHISKNKDTGTYEDFVEGLRVFDKEGNGTVMGAELRHVLATLGERLTEDEVEKLMAGQE-DSNGCINYEAFVKHIMS 194          
BLAST of BQ623619 vs. ExPASy Swiss-Prot
Match: MYL3_HUMAN (Myosin light chain 3 OS=Homo sapiens GN=MYL3 PE=1 SV=3)

HSP 1 Score: 114.775 bits (286), Expect = 3.036e-25
Identity = 67/155 (43.23%), Postives = 100/155 (64.52%), Query Frame = 2
Query:   38 KMADQLTDDQISEFKEAFSLFDKDG--DGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGT--IDFPEFLNLMAR--KMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 484
            K+  + T +QI EFKEAF LFD+    +  IT  + G V+R+LGQNPT+AE+  ++ +   +   T  +DF  FL ++    K KDT + E+  E  RVFDK+ NG +  AELRHV+  LGE+LT++EV++++   + D +G INYE FVK +M+
Sbjct:   41 KIKIEFTPEQIEEFKEAFMLFDRTPKCEMKITYGQCGDVLRALGQNPTQAEVLRVLGKPRQEELNTKMMDFETFLPMLQHISKNKDTGTYEDFVEGLRVFDKEGNGTVMGAELRHVLATLGERLTEDEVEKLMAGQE-DSNGCINYEAFVKHIMS 194          
BLAST of BQ623619 vs. ExPASy Swiss-Prot
Match: MYL1_HUMAN (Myosin light chain 1/3, skeletal muscle isoform OS=Homo sapiens GN=MYL1 PE=1 SV=3)

HSP 1 Score: 114.775 bits (286), Expect = 3.036e-25
Identity = 66/149 (44.30%), Postives = 94/149 (63.09%), Query Frame = 2
Query:   50 QLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMI-NEVDADGNG-TIDFPEFLNLM--ARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 484
            + + +Q  EFKEAF LFD+ GD  IT  ++G V+R+LG NPT AE++ ++ N  + + N   I+F +FL +M      KD  + E+  E  RVFDK+ NG +  AELRHV+  LGEK+ +EEV E +     D +G INYE FVK +M+
Sbjct:   46 EFSKEQQDEFKEAFLLFDRTGDSKITLSQVGDVLRALGTNPTNAEVRKVLGNPSNEELNAKKIEFEQFLPMMQAISNNKDQATYEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMKEEEV-EALMAGQEDSNGCINYEAFVKHIMS 193          
BLAST of BQ623619 vs. ExPASy Swiss-Prot
Match: CABP4_MOUSE (Calcium-binding protein 4 OS=Mus musculus GN=Cabp4 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.965e-25
Identity = 63/148 (42.57%), Postives = 93/148 (62.84%), Query Frame = 2
Query:   50 QLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSE----EELKEAFRVFDKDQNGFISAAELRHVM-TNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 478
            +L  +++ E + AF  FD D DG I  +ELG  MR+LG  PTE EL ++   V     G +DF EF+ L++ K+++  +      EL+ AFR FDKD++G I+ AELR      LGE L   E+DEM+RE D++GDG I+++EFV ++
Sbjct:  121 ELGPEELEELQAAFEEFDTDQDGYIGYRELGDCMRTLGYMPTEMELLEVSQHVKMRMGGFVDFEEFVELISPKLREETAHMLGVRELRIAFREFDKDRDGRITVAELRQAAPALLGEPLEGTELDEMLREMDLNGDGTIDFDEFVMML 268          
BLAST of BQ623619 vs. ExPASy Swiss-Prot
Match: CML3_ARATH (Calmodulin-like protein 3 OS=Arabidopsis thaliana GN=CML3 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 5.179e-25
Identity = 57/138 (41.30%), Postives = 90/138 (65.22%), Query Frame = 2
Query:   71 SEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEK--LTDEEVDEMIREADVDGDGQINYEEFVKVM 478
            +E    F +FD++GDG IT +EL   + +LG    + +L  MI ++D +G+G +D  EF  L    M++ D EE+++EAF VFD++++GFI+  ELR V+ +LG K   T E+   MI + DVDGDG +N++EF ++M
Sbjct:    4 AELARIFQMFDRNGDGKITKQELNDSLENLGIYIPDKDLVQMIEKIDLNGDGYVDIEEFGGLYQTIMEERDEEEDMREAFNVFDQNRDGFITVEELRSVLASLGLKQGRTLEDCKRMISKVDVDGDGMVNFKEFKQMM 141          
BLAST of BQ623619 vs. ExPASy Swiss-Prot
Match: CML23_ARATH (Probable calcium-binding protein CML23 OS=Arabidopsis thaliana GN=CML23 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 5.179e-25
Identity = 60/140 (42.86%), Postives = 89/140 (63.57%), Query Frame = 2
Query:   68 ISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNL--MARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 481
            + + K+ F  FDK+ DG I+  EL  V+ +L  N ++ E + M+ E D DGNG ID  EF+ L  ++ +  +  +  +LKEAF ++D D+NG ISA EL  VM NLGEK + ++   MI + D DGDG +++EEF K+MM
Sbjct:   13 MEDIKKVFQRFDKNNDGKISIDELKDVIGALSPNASQEETKAMMKEFDLDGNGFIDLDEFVALFQISDQSSNNSAIRDLKEAFDLYDLDRNGRISANELHSVMKNLGEKCSIQDCQRMINKVDSDGDGCVDFEEFKKMMM 152          
BLAST of BQ623619 vs. ExPASy Swiss-Prot
Match: MYL4_RAT (Myosin light chain 4 OS=Rattus norvegicus GN=Myl4 PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 6.764e-25
Identity = 64/147 (43.54%), Postives = 96/147 (65.31%), Query Frame = 2
Query:   62 DQISEFKEAFSLFDKD--GDGCITTKELGTVMRSLGQNPTEAELQDMINEVDAD--GNGTIDFPEFLNLMAR--KMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 484
            DQI EFKEAFSLFD+   G+  IT  + G V+R+LGQNPT AE+  ++ +   +   + T+DF  FL ++    + K+  + E+  E  RVFDK+ NG +  AELRHV+  LGEK+++ EV++++   + D +G INYE FVK +M+
Sbjct:   47 DQIEEFKEAFSLFDRTPTGEMKITYGQCGDVLRALGQNPTNAEVLRVLGKPKPEEMNSKTLDFEMFLPILQHISRNKEQGTYEDFVEGLRVFDKESNGTVMGAELRHVLATLGEKMSEAEVEQLLTGQE-DANGCINYEAFVKHVMS 192          
BLAST of BQ623619 vs. ExPASy Swiss-Prot
Match: MYL4_MOUSE (Myosin light chain 4 OS=Mus musculus GN=Myl4 PE=2 SV=3)

HSP 1 Score: 113.62 bits (283), Expect = 6.764e-25
Identity = 64/147 (43.54%), Postives = 95/147 (64.63%), Query Frame = 2
Query:   62 DQISEFKEAFSLFDKD--GDGCITTKELGTVMRSLGQNPTEAELQDMINEVDAD--GNGTIDFPEFLNLMAR--KMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 484
            DQI EFKEAFSLFD+   G+  IT  + G V+R+LGQNPT AE+  ++ +   +   + T+DF  FL ++    + K+  + E+  E  RVFDK+ NG +  AELRHV+  LGEK+++ EV++++     D +G INYE FVK +M+
Sbjct:   47 DQIEEFKEAFSLFDRTPTGEMKITYGQCGDVLRALGQNPTNAEVLRVLGKPKPEEMSSKTLDFEMFLPILQHISRNKEQGTYEDFVEGLRVFDKESNGTVMGAELRHVLATLGEKMSEAEVEQLL-SGQEDANGCINYEAFVKHIMS 192          
BLAST of BQ623619 vs. ExPASy Swiss-Prot
Match: MYL4_HUMAN (Myosin light chain 4 OS=Homo sapiens GN=MYL4 PE=1 SV=3)

HSP 1 Score: 113.62 bits (283), Expect = 6.764e-25
Identity = 65/149 (43.62%), Postives = 95/149 (63.76%), Query Frame = 2
Query:   56 TDDQISEFKEAFSLFDKD--GDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGT--IDFPEFLNLMAR--KMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 484
            T DQI EFKEAFSLFD+   G+  IT  + G V+R+LGQNPT AE+  ++ +   +      +DF  FL ++    + K+  + E+  E  RVFDK+ NG +  AELRHV+  LGEK+T+ EV++++   + D +G INYE FVK +M+
Sbjct:   49 TADQIEEFKEAFSLFDRTPTGEMKITYGQCGDVLRALGQNPTNAEVLRVLGKPKPEEMNVKMLDFETFLPILQHISRNKEQGTYEDFVEGLRVFDKESNGTVMGAELRHVLATLGEKMTEAEVEQLLAGQE-DANGCINYEAFVKHIMS 196          
BLAST of BQ623619 vs. ExPASy Swiss-Prot
Match: TNNC2_DROME (Troponin C, isoform 2 OS=Drosophila melanogaster GN=TpnC47D PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 8.834e-25
Identity = 55/147 (37.41%), Postives = 97/147 (65.99%), Query Frame = 2
Query:   47 DQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSE---EELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 478
            + LT +QI+  ++AF+ FD    G I T+ +  ++R +GQ      L ++I+EVD D +G ++F EF+ L A+ + + D E   +EL+EAFR++DK  NG+I  + L+ ++  L ++LT++E+D MI E D DG G ++++EF+++M
Sbjct:    6 EDLTPEQIAVLQKAFNSFDHQKTGSIPTEMVADILRLMGQPFDRQILDELIDEVDEDKSGRLEFEEFVQLAAKFIVEEDDEAMQKELREAFRLYDKQGNGYIPTSCLKEILKELDDQLTEQELDIMIEEIDSDGSGTVDFDEFMEMM 152          
The following BLAST results are available for this feature:
BLAST of BQ623619 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 487
Match NameE-valueIdentityDescription
MYL3_PONAB3.036e-2543.23Myosin light chain 3 OS=Pongo abelii GN=MYL3 PE=2 ... [more]
MYL3_HUMAN3.036e-2543.23Myosin light chain 3 OS=Homo sapiens GN=MYL3 PE=1 ... [more]
MYL1_HUMAN3.036e-2544.30Myosin light chain 1/3, skeletal muscle isoform OS... [more]
CABP4_MOUSE3.965e-2542.57Calcium-binding protein 4 OS=Mus musculus GN=Cabp4... [more]
CML3_ARATH5.179e-2541.30Calmodulin-like protein 3 OS=Arabidopsis thaliana ... [more]
CML23_ARATH5.179e-2542.86Probable calcium-binding protein CML23 OS=Arabidop... [more]
MYL4_RAT6.764e-2543.54Myosin light chain 4 OS=Rattus norvegicus GN=Myl4 ... [more]
MYL4_MOUSE6.764e-2543.54Myosin light chain 4 OS=Mus musculus GN=Myl4 PE=2 ... [more]
MYL4_HUMAN6.764e-2543.62Myosin light chain 4 OS=Homo sapiens GN=MYL4 PE=1 ... [more]
TNNC2_DROME8.834e-2537.41Troponin C, isoform 2 OS=Drosophila melanogaster G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00710 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00710 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623619 ID=BQ623619; Name=BQ623619; organism=Citrus sinensis; type=EST; length=567bp
TACCTATTTCTGAGTTGAAAAAACAAACGGAAGAAGAAAAATGGCGGATC
AGCTCACGGACGATCAGATCTCTGAGTTCAAAGAGGCCTTCAGCTTGTTT
GACAAGGATGGCGACGGTTGCATTACCACCAAGGAGCTTGGCACTGTTAT
GAGGTCACTGGGTCAGAACCCCACTGAGGCTGAGCTCCAGGACATGATCA
ATGAAGTGGATGCTGATGGTAATGGAACTATTGATTTTCCTGAATTCCTA
AACCTCATGGCCAGGAAGATGAAGGATACCGACTCTGAGGAGGAGCTGAA
AGAGGCCTTCCGGGTTTTCGACAAGGATCAGAATGGTTTCATCTCAGCTG
CTGAGCTGCGCCATGTGATGACAAACCTAGGAGAGAAACTTACTGATGAA
GAAGTTGATGAGATGATAAGGGAAGCTGATGTTGATGGTGATGGCCAGAT
AAATTATGAGGAATTTGTCAAGGTTATGATGGCCAAGTACTGACCCCACA
CCACCAATACTTATAAAATGGGTTGACTAAATTATAAAGGGATTCCTAGT
ATTTCTCTTTTACATTT
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