BQ623622

Overview
NameBQ623622
Unique NameBQ623622
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length448
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623622 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 9.293e-40
Identity = 77/79 (97.47%), Postives = 78/79 (98.73%), Query Frame = 1
Query:    1 PLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 237
            PLYPGGSFDPLGLADD EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  186 PLYPGGSFDPLGLADDAEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264          
BLAST of BQ623622 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 9.293e-40
Identity = 76/79 (96.20%), Postives = 78/79 (98.73%), Query Frame = 1
Query:    1 PLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 237
            P+YPGGSFDPL LADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA+PVNNNAWAYATNFVPGK
Sbjct:  167 PIYPGGSFDPLALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVNNNAWAYATNFVPGK 245          
BLAST of BQ623622 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.704e-39
Identity = 73/79 (92.41%), Postives = 79/79 (100.00%), Query Frame = 1
Query:    1 PLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 237
            P+YPGG+FDPLGLADDP+AFA++KVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  200 PIYPGGNFDPLGLADDPDAFADVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278          
BLAST of BQ623622 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 4.612e-39
Identity = 76/78 (97.44%), Postives = 77/78 (98.72%), Query Frame = 1
Query:    4 LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 237
            LYPGGSFDPLGLA DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  189 LYPGGSFDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266          
BLAST of BQ623622 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 6.024e-39
Identity = 74/79 (93.67%), Postives = 78/79 (98.73%), Query Frame = 1
Query:    1 PLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 237
            PLYPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADH+ADPV NNAWA+ATNFVPGK
Sbjct:  186 PLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPVANNAWAFATNFVPGK 264          
BLAST of BQ623622 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 7.867e-39
Identity = 74/79 (93.67%), Postives = 76/79 (96.20%), Query Frame = 1
Query:    1 PLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 237
            PLYPGGSFDPLGLADDPEAF ELKVKE+K GRLAM SMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWAYATNFVPGK
Sbjct:  187 PLYPGGSFDPLGLADDPEAFGELKVKELKKGRLAMLSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPGK 265          
BLAST of BQ623622 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.342e-38
Identity = 74/78 (94.87%), Postives = 77/78 (98.72%), Query Frame = 1
Query:    4 LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 237
            LYPGGSFDPLGLA DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  190 LYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267          
BLAST of BQ623622 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.342e-38
Identity = 74/78 (94.87%), Postives = 77/78 (98.72%), Query Frame = 1
Query:    4 LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 237
            LYPGGSFDPLGLA DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  190 LYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267          
BLAST of BQ623622 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.753e-38
Identity = 74/79 (93.67%), Postives = 77/79 (97.47%), Query Frame = 1
Query:    1 PLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 237
            PLYPGGSFDPLGLA+DPE  AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  186 PLYPGGSFDPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264          
BLAST of BQ623622 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 2.289e-38
Identity = 74/79 (93.67%), Postives = 77/79 (97.47%), Query Frame = 1
Query:    1 PLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 237
            PLYPGGSFDPLGLA+ PEAFAELKVKE+KNGRLAMFSMFGFFV AIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  150 PLYPGGSFDPLGLAEVPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 228          
The following BLAST results are available for this feature:
BLAST of BQ623622 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
CB22_HORVU9.293e-4097.47Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_SOYBN9.293e-4096.20Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB2A_PYRPY2.704e-3992.41Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB21_SINAL4.612e-3997.44Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_LEMGI6.024e-3993.67Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_MAIZE7.867e-3993.67Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_ARATH1.342e-3894.87Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH1.342e-3894.87Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB23_APIGR1.753e-3893.67Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_PEA2.289e-3893.67Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00713 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00713 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623622 ID=BQ623622; Name=BQ623622; organism=Citrus sinensis; type=EST; length=448bp
CCATTGTACCCAGGTGGCAGCTTTGATCCATTGGGTTTGGCTGATGACCC
GGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAAGAATGGAAGGTTGG
CTATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCATTGTCACCGGCAAG
GGACCGTTAGAGAACTTGGCCGACCACTTGGCCGACCCTGTCAACAACAA
TGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAAGTGAGCTTCGGTTG
ATAACATTAGTAGCGTGGAAATTGGAATTGAGAGTGATTGGTTATTGATG
TGACTCTATTTCAACTTGCAAAACATGTGAATTATGTAATGTACTGCTAC
TACTAGTTTGAGGGGATTGTATTTTCATTCAATCTCTTGTCGCACAAAAA
AACATAATTATAAATAAAATTATATATTTTTTTTTTTTTTAAAAAAAC
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