BQ623628

Overview
NameBQ623628
Unique NameBQ623628
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length413
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623628 vs. ExPASy Swiss-Prot
Match: RS5_PYRAE (30S ribosomal protein S5P OS=Pyrobaculum aerophilum GN=rps5p PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.115e-22
Identity = 55/128 (42.97%), Postives = 86/128 (67.19%), Query Frame = 1
Query:    1 KIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRR--GYWGNKIGRPHTVPCKVTGKCGSVTVRMVPGP 378
            KIR++++I+ ++  IKE +I+D L+   LK E++ +  VQ+QT AG+R +F+A V VG+ DG+VG+G+  +++V  AI  A   AKL+++PVRR  G W      PH+VP  V GK GSV + ++P P
Sbjct:   39 KIRTIDEIFANNYIIKEPEIVDILLPG-LKQELLNVNLVQRQTHAGERNQFQAVVAVGNEDGYVGVGIGKARQVRQAIEKATREAKLNLVPVRRGCGSWKCSCDEPHSVPFVVRGKSGSVEITLIPAP 165          
BLAST of BQ623628 vs. ExPASy Swiss-Prot
Match: RS5_METTH (30S ribosomal protein S5P OS=Methanobacterium thermoautotrophicum GN=rps5p PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.457e-22
Identity = 57/127 (44.88%), Postives = 83/127 (65.35%), Query Frame = 1
Query:    4 IRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPGP 378
            I S+++I+    PI E +IID L+   L++EV+ +  VQ+  ++G++  F+  V VG+ DG+VGLG   ++EV  AIR A+  AK ++I VRRG   WG   GR HTVP KV+GK GSV V ++P P
Sbjct:   25 ITSIDEIFEEGHPIMELEIIDALLPD-LEEEVIDVNLVQRMHKSGRKVNFRVIVAVGNKDGYVGLGQGKAREVGPAIRKAVDDAKFNIIKVRRGCGDWGCVCGREHTVPFKVSGKSGSVRVTLIPAP 150          
BLAST of BQ623628 vs. ExPASy Swiss-Prot
Match: RS5_SULTO (30S ribosomal protein S5P OS=Sulfolobus tokodaii GN=rps5p PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.902e-22
Identity = 58/128 (45.31%), Postives = 85/128 (66.41%), Query Frame = 1
Query:    1 KIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRR--GYWGNKIGRPHTVPCKVTGKCGSVTVRMVPGP 378
            KI S+++I+  + PI E +I+D L+  KLK EVM I  VQKQT AG+ +++K  +V+G+ DG+V  G   +K++  AI+ AI  AK+++IPVRR  G W    G  H++P KV GK GSV V ++P P
Sbjct:   27 KITSMKEIFEKNYPITEPEIVDVLLP-KLKYEVMDIKIVQKQTDAGEISKYKVLIVMGNMDGYVSYGTGKAKQLRVAIQKAIKNAKMNIIPVRRGCGSWECTCGEAHSLPFKVYGKAGSVEVLLMPAP 153          
BLAST of BQ623628 vs. ExPASy Swiss-Prot
Match: RS5_AERPE (30S ribosomal protein S5P OS=Aeropyrum pernix GN=rps5p PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.238e-22
Identity = 61/128 (47.66%), Postives = 83/128 (64.84%), Query Frame = 1
Query:    1 KIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRR--GYWGNKIGRPHTVPCKVTGKCGSVTVRMVPGP 378
            KI+S+++I+  +LPI E +I+D L+   L  EV+ +  VQK T AG+ TRF+A VVVG+ DG+VGLG   +++   AI  AI  AKL++IPVRR  G W    G  H+VP  V GK GSV V + P P
Sbjct:   28 KIKSIDEIFRRNLPILETEIVDYLLPG-LDHEVIDVSIVQKMTDAGRITRFRAVVVVGNKDGYVGLGKGKARQFRFAIEKAIRNAKLNIIPVRRGCGSWECTCGEAHSVPFTVRGKSGSVEVILKPAP 154          
BLAST of BQ623628 vs. ExPASy Swiss-Prot
Match: RS5_ARCFU (30S ribosomal protein S5P OS=Archaeoglobus fulgidus GN=rps5p PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.441e-22
Identity = 54/128 (42.19%), Postives = 87/128 (67.97%), Query Frame = 1
Query:    1 KIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRR--GYWGNKIGRPHTVPCKVTGKCGSVTVRMVPGP 378
            KI+++++    +LP+KE +I+D L+   L+D+V++I  VQ+ T +G+RT+F+   VVG+ +G+VG+G   + +VA AI+ AI  AKL++  V+R  G W    G  H++P KVTG  GSV V ++PGP
Sbjct:   19 KIKTMDEALASNLPLKEPEIVDILLPD-LEDDVLEISMVQRMTDSGRRTKFRVTAVVGNRNGYVGIGTGKASQVAPAIQKAINNAKLNIFKVQRGCGSWECGCGGDHSLPFKVTGTSGSVRVTLIPGP 145          
BLAST of BQ623628 vs. ExPASy Swiss-Prot
Match: RS5_METS3 (30S ribosomal protein S5P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps5p PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.233e-21
Identity = 55/127 (43.31%), Postives = 82/127 (64.57%), Query Frame = 1
Query:    4 IRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPGP 378
            I  +++I+   LPI E +I+D L+   L++EVM +  VQ+  ++G++  F+  V VG+ +G+VGLG   +KEV  AIR A+  AK ++I VRRG   WG   G+ HTVP KV GK  SV+V ++P P
Sbjct:   23 ITDIDEIFEKGLPIMELEIVDALVPD-LEEEVMDVNLVQRMHKSGRKVNFRVIVAVGNKNGYVGLGQGKAKEVGPAIRKAVDNAKYNLIKVRRGCGDWGCVCGKEHTVPFKVQGKASSVSVSLMPAP 148          
BLAST of BQ623628 vs. ExPASy Swiss-Prot
Match: RS5_PYRFU (30S ribosomal protein S5P OS=Pyrococcus furiosus GN=rps5p PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.747e-21
Identity = 56/131 (42.75%), Postives = 79/131 (60.31%), Query Frame = 1
Query:    1 KIRSLEQIYLHSLPIKEYQIIDTL---IGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRR--GYWGNKIGRPHTVPCKVTGKCGSVTVRMVPGP 378
            +I  + +I+     IKE +IID L   +  +   EV+ I    + T +G+R RF+    VG+ DG+VGLG+   KEV  AIR AI  AKL++I ++R  G W  +  RPH+VP  V GK GSV VR++PGP
Sbjct:   30 QITDIHEIFRRGYQIKEPEIIDVLLPEVNARENQEVLDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGKEVGIAIRKAINYAKLNIIEIKRGCGSWECRCRRPHSVPFAVEGKEGSVRVRLIPGP 160          
BLAST of BQ623628 vs. ExPASy Swiss-Prot
Match: RS5_PICTO (30S ribosomal protein S5P OS=Picrophilus torridus GN=rps5p PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.747e-21
Identity = 56/128 (43.75%), Postives = 82/128 (64.06%), Query Frame = 1
Query:    1 KIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRR--GYWGNKIGRPHTVPCKVTGKCGSVTVRMVPGP 378
            +I+++ +     LP+KEYQI+D LI   LKDEV+ I   Q+ T +G+R  +    VVG+ +G+VG+G   +KE A AI+ AI  AKL++I ++R  G W    G+PHT+P  V GK GSV+V + P P
Sbjct:   19 EIKTISEALHSKLPLKEYQIVDYLIPD-LKDEVINIERAQRMTDSGRRMNYSITAVVGNGNGYVGVGRGKAKEAAPAIKKAIDNAKLNIIEIKRGCGSWECGCGKPHTLPFLVNGKSGSVSVTLKPAP 145          
BLAST of BQ623628 vs. ExPASy Swiss-Prot
Match: RS5_METST (30S ribosomal protein S5P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps5p PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.747e-21
Identity = 55/128 (42.97%), Postives = 81/128 (63.28%), Query Frame = 1
Query:    1 KIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPGP 378
            +I  ++QI    LPI E +I+D L+   L++EVM +  VQ+  ++G++  F+  V VG+ +G+VGLG   S+EV  AIR A+  AK ++I VRRG   WG   GR HTVP K+ GK  SV+  ++P P
Sbjct:   36 EITDIDQILDKGLPIMELEIVDALLPD-LEEEVMDVNLVQRMHKSGRKVNFRVIVAVGNRNGYVGLGQGKSQEVGPAIRKAVDAAKYNLIKVRRGCGDWGCGCGRRHTVPFKIEGKMSSVSATLIPAP 162          
BLAST of BQ623628 vs. ExPASy Swiss-Prot
Match: RS5_METBU (30S ribosomal protein S5P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps5p PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.747e-21
Identity = 56/128 (43.75%), Postives = 83/128 (64.84%), Query Frame = 1
Query:    1 KIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRR--GYWGNKIGRPHTVPCKVTGKCGSVTVRMVPGP 378
            ++ S+++     LPI+E +I+D L+  +L+DEV+ I  VQ+ T +G+R +F+A V+VG+ DG VGLG     +V  AIR AI  AK+++  ++R  G W    G PHTVP +V GK GSVTV + P P
Sbjct:   23 QVTSMDEAMDSGLPIRESKIVDLLLP-ELEDEVLDINMVQRMTDSGRRVKFRATVIVGNGDGFVGLGQAKDVQVGPAIRKAIDNAKINITRIKRGCGSWECGCGLPHTVPSEVNGKAGSVTVVLKPAP 149          
The following BLAST results are available for this feature:
BLAST of BQ623628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
RS5_PYRAE1.115e-2242.9730S ribosomal protein S5P OS=Pyrobaculum aerophilu... [more]
RS5_METTH1.457e-2244.8830S ribosomal protein S5P OS=Methanobacterium ther... [more]
RS5_SULTO1.902e-2245.3130S ribosomal protein S5P OS=Sulfolobus tokodaii G... [more]
RS5_AERPE4.238e-2247.6630S ribosomal protein S5P OS=Aeropyrum pernix GN=r... [more]
RS5_ARCFU9.441e-2242.1930S ribosomal protein S5P OS=Archaeoglobus fulgidu... [more]
RS5_METS31.233e-2143.3130S ribosomal protein S5P OS=Methanobrevibacter sm... [more]
RS5_PYRFU2.747e-2142.7530S ribosomal protein S5P OS=Pyrococcus furiosus G... [more]
RS5_PICTO2.747e-2143.7530S ribosomal protein S5P OS=Picrophilus torridus ... [more]
RS5_METST2.747e-2142.9730S ribosomal protein S5P OS=Methanosphaera stadtm... [more]
RS5_METBU2.747e-2143.7530S ribosomal protein S5P OS=Methanococcoides burt... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00719 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00719 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623628 ID=BQ623628; Name=BQ623628; organism=Citrus sinensis; type=EST; length=413bp
AAGATCAGGAGCCTCGAGCAAATCTACCTCCACTCGCTCCCAATCAAGGA
GTATCAAATCATCGACACGCTTATCGGCCACAAATTGAAGGACGAGGTCA
TGAAGATCATGCCGGTGCAGAAACAGACACGTGCCGGTCAGAGGACGAGG
TTCAAGGCCTTCGTCGTCGTCGGTGACACGGACGGCCACGTGGGTCTTGG
CGTTAAGTGCTCCAAAGAGGTTGCCACTGCCATCCGTGGCGCTATCATAT
TGGCGAAGCTGTCGGTGATTCCGGTGAGAAGGGGTTACTGGGGTAACAAG
ATCGGGAGGCCACACACCGTGCCGTGTAAGGTGACCGGTAAGTGTGGCAG
TGTCACCGTGAGGATGGTTCCCGGCCCCACGTGGTGCCGGAATTGTGGCG
CTAGGGCTTCAAC
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