BQ623628

Overview
NameBQ623628
Unique NameBQ623628
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length413
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623628 vs. ExPASy Swiss-Prot
Match: RS5_IGNH4 (30S ribosomal protein S5P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps5p PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.588e-21
Identity = 58/128 (45.31%), Postives = 82/128 (64.06%), Query Frame = 1
Query:    1 KIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRR--GYWGNKIGRPHTVPCKVTGKCGSVTVRMVPGP 378
            KI S+ +++  +LPI E +I+D L+   LK EV+ +  VQK T AG+ TR +  VV+G+ DG VGLG+  +K++  AI+ A+  AKL++ PVRR  G W    G PH+VP  V GK GSV V + P P
Sbjct:   24 KITSIYELFEKNLPILEPEIVDYLVPD-LKHEVLDVSLVQKVTDAGRVTRLRVLVVIGNEDGLVGLGMGKAKQMRFAIQKALANAKLNITPVRRGCGSWECTCGEPHSVPFTVRGKSGSVEVILKPAP 150          
BLAST of BQ623628 vs. ExPASy Swiss-Prot
Match: RS5_UNCMA (30S ribosomal protein S5P OS=Uncultured methanogenic archaeon RC-I GN=rps5p PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.685e-21
Identity = 58/128 (45.31%), Postives = 81/128 (63.28%), Query Frame = 1
Query:    1 KIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRR--GYWGNKIGRPHTVPCKVTGKCGSVTVRMVPGP 378
            KI ++E+ +   LPIKEYQI+D L+   L DEV+ I  VQ+ T +G+R +F+  VVVG+ +G+VGL      +V  AIR AI  AKL++I V R  G W    G  HTVP +V G+ GS+ V ++P P
Sbjct:   26 KITTMEEAFETGLPIKEYQIVDALLPD-LVDEVLDISMVQRMTDSGRRVKFRTTVVVGNGNGYVGLAQGKGVQVGPAIRKAIENAKLNIIKVARGCGSWECGCGLTHTVPSQVEGRAGSLKVVLMPAP 152          
BLAST of BQ623628 vs. ExPASy Swiss-Prot
Match: RS5_STAMF (30S ribosomal protein S5P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps5p PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.685e-21
Identity = 57/128 (44.53%), Postives = 83/128 (64.84%), Query Frame = 1
Query:    1 KIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRR--GYWGNKIGRPHTVPCKVTGKCGSVTVRMVPGP 378
            KI SL++I+  +LP+ E +I+D L+   LK E + +  VQK T AG+R+RF+  VVVG+ DG VG+G   +++   A+R A+  AKL++ PVRR  G W  + G PH++P  V GK GSV V + P P
Sbjct:   28 KITSLKEIFDRNLPLLEPEIVDYLLPD-LKYERLDVGIVQKVTDAGRRSRFRVVVVVGNEDGFVGVGSGKARQYLVALRKALRNAKLNITPVRRGCGSWECRCGEPHSIPFTVQGKSGSVVVVLKPAP 154          
BLAST of BQ623628 vs. ExPASy Swiss-Prot
Match: RS5_METS5 (30S ribosomal protein S5P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps5p PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.685e-21
Identity = 58/128 (45.31%), Postives = 84/128 (65.62%), Query Frame = 1
Query:    1 KIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRR--GYWGNKIGRPHTVPCKVTGKCGSVTVRMVPGP 378
            KI S++++Y  ++ I E +IID L+ + +K EV+ I  VQKQT AG+ +R+K  VV+G+ DG+V +GV  SK++  AI+ AI  AK+ VIPVRR  G W    G  H++P  V+GK GS  V + P P
Sbjct:   27 KITSIKELYARNMSIAEPEIIDVLLPN-MKYEVIDIGMVQKQTDAGELSRYKVLVVMGNYDGYVSIGVGKSKQLRVAIQKAIRDAKMHVIPVRRGCGSWECTCGESHSLPFLVSGKSGSAEVVLRPAP 153          
BLAST of BQ623628 vs. ExPASy Swiss-Prot
Match: RS5_SULAC (30S ribosomal protein S5P OS=Sulfolobus acidocaldarius GN=rps5p PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.119e-21
Identity = 53/128 (41.41%), Postives = 85/128 (66.41%), Query Frame = 1
Query:    1 KIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRR--GYWGNKIGRPHTVPCKVTGKCGSVTVRMVPGP 378
            KI S+++++  +LPI E +I+D L+  KL+ +++ I  VQKQT AG+ +R+K  +V+G+ DG++  G   +K++  AI+ AI  AK+ +IPVRR  G W    G  H++P  V+GK GSV V ++P P
Sbjct:   27 KINSMKELFERNLPIVEPEIVDVLLP-KLRYDIVDIGIVQKQTDAGELSRYKVLIVMGNMDGYISYGTGKAKQLRVAIQKAIRDAKMRIIPVRRGCGSWECTCGESHSLPFIVSGKAGSVEVTLLPAP 153          
BLAST of BQ623628 vs. ExPASy Swiss-Prot
Match: RS5_PYRHO (30S ribosomal protein S5P OS=Pyrococcus horikoshii GN=rps5p PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.044e-20
Identity = 54/131 (41.22%), Postives = 79/131 (60.31%), Query Frame = 1
Query:    1 KIRSLEQIYLHSLPIKEYQIIDTL---IGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRR--GYWGNKIGRPHTVPCKVTGKCGSVTVRMVPGP 378
            +I  + +I+     IKE +IID L   +  +   E++ I    + T +G+R RF+    VG+ DG+VGLG+   +EV  AIR AI  AKL++I ++R  G W  +  RPH+VP  V GK GSV VR++PGP
Sbjct:   30 QITDIHEIFRRGYQIKEPEIIDVLLPEVNARENQEIIDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNIIEIKRGCGSWECRCRRPHSVPFAVEGKEGSVRVRLIPGP 160          
BLAST of BQ623628 vs. ExPASy Swiss-Prot
Match: RS5_METJA (30S ribosomal protein S5P OS=Methanocaldococcus jannaschii GN=rps5p PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.363e-20
Identity = 53/128 (41.41%), Postives = 84/128 (65.62%), Query Frame = 1
Query:    1 KIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRR--GYWGNKIGRPHTVPCKVTGKCGSVTVRMVPGP 378
            +I  ++ I  ++LPI E +I+D L+   L+++V+ +  VQ+  ++G+R RF+A VVVG+ +G+VG+G   +KEV  AIR AI  AK ++I V+R  G W    G PH++P K  GKCGS  + ++P P
Sbjct:   22 QITDIDYILDNNLPILEPEIVDALLPD-LEEKVLDVKLVQRMHKSGRRARFRATVVVGNRNGYVGVGKGKAKEVGPAIRKAIAQAKKNIIRVKRGCGSWECGCGTPHSIPYKGYGKCGSTAIEILPAP 148          
BLAST of BQ623628 vs. ExPASy Swiss-Prot
Match: RS5_METHJ (30S ribosomal protein S5P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps5p PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.363e-20
Identity = 53/128 (41.41%), Postives = 80/128 (62.50%), Query Frame = 1
Query:    1 KIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRR--GYWGNKIGRPHTVPCKVTGKCGSVTVRMVPGP 378
            +I+S+++I     PIKE +I+D  +   L DEV+ I  VQ+ T +G+R +F+A VVVG+ DG++G G     +V  AI+ AI+ AK++++ VRR  G W      PH++P  VTG  GSV V + P P
Sbjct:   22 EIKSIDEILSSGKPIKEPEIVDAFLPD-LVDEVLDINMVQRMTDSGRRVKFRAVVVVGNRDGYIGFGQGKDAQVGDAIKKAIVSAKINLVKVRRGCGSWECGCSNPHSIPMLVTGDAGSVRVTLRPAP 148          
BLAST of BQ623628 vs. ExPASy Swiss-Prot
Match: RS5_PYRAB (30S ribosomal protein S5P OS=Pyrococcus abyssi GN=rps5p PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.325e-20
Identity = 53/131 (40.46%), Postives = 79/131 (60.31%), Query Frame = 1
Query:    1 KIRSLEQIYLHSLPIKEYQIIDTL---IGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRR--GYWGNKIGRPHTVPCKVTGKCGSVTVRMVPGP 378
            +I  + +I+     IKE +IID L   +  +   E++ I    + T +G+R RF+    VG+ DG+VGLG+   +EV  AIR AI  AKL++I ++R  G W  +  RPH+VP  V GK GSV V+++PGP
Sbjct:   30 QITDIHEIFRKGYQIKEPEIIDVLLPEVNARENQEILDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNIIEIKRGCGSWECRCRRPHSVPFTVEGKEGSVRVKLIPGP 160          
BLAST of BQ623628 vs. ExPASy Swiss-Prot
Match: RS5_METTP (30S ribosomal protein S5P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps5p PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.325e-20
Identity = 53/128 (41.41%), Postives = 81/128 (63.28%), Query Frame = 1
Query:    1 KIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRR--GYWGNKIGRPHTVPCKVTGKCGSVTVRMVPGP 378
            ++ + E+     LPIKE+QIID L+   L+DEV+ I  VQ+ T +G+R +F+  V+VG+ DG++G+G     +V  AI+  I  AKL+V+ + R  G W    G+ HTVP KV+G  GSV + ++P P
Sbjct:   24 QVTTFEEAVRSGLPIKEHQIIDLLLPG-LEDEVLDITMVQRMTDSGRRVKFRTTVIVGNRDGYIGIGHGKDVQVGGAIKKGIENAKLNVVRINRGCGSWECGCGQAHTVPYKVSGSSGSVRIYLMPAP 150          
The following BLAST results are available for this feature:
BLAST of BQ623628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
RS5_IGNH43.588e-2145.3130S ribosomal protein S5P OS=Ignicoccus hospitalis... [more]
RS5_UNCMA4.685e-2145.3130S ribosomal protein S5P OS=Uncultured methanogen... [more]
RS5_STAMF4.685e-2144.5330S ribosomal protein S5P OS=Staphylothermus marin... [more]
RS5_METS54.685e-2145.3130S ribosomal protein S5P OS=Metallosphaera sedula... [more]
RS5_SULAC6.119e-2141.4130S ribosomal protein S5P OS=Sulfolobus acidocalda... [more]
RS5_PYRHO1.044e-2041.2230S ribosomal protein S5P OS=Pyrococcus horikoshii... [more]
RS5_METJA1.363e-2041.4130S ribosomal protein S5P OS=Methanocaldococcus ja... [more]
RS5_METHJ1.363e-2041.4130S ribosomal protein S5P OS=Methanospirillum hung... [more]
RS5_PYRAB2.325e-2040.4630S ribosomal protein S5P OS=Pyrococcus abyssi GN=... [more]
RS5_METTP2.325e-2041.4130S ribosomal protein S5P OS=Methanosaeta thermoph... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00719 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00719 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623628 ID=BQ623628; Name=BQ623628; organism=Citrus sinensis; type=EST; length=413bp
AAGATCAGGAGCCTCGAGCAAATCTACCTCCACTCGCTCCCAATCAAGGA
GTATCAAATCATCGACACGCTTATCGGCCACAAATTGAAGGACGAGGTCA
TGAAGATCATGCCGGTGCAGAAACAGACACGTGCCGGTCAGAGGACGAGG
TTCAAGGCCTTCGTCGTCGTCGGTGACACGGACGGCCACGTGGGTCTTGG
CGTTAAGTGCTCCAAAGAGGTTGCCACTGCCATCCGTGGCGCTATCATAT
TGGCGAAGCTGTCGGTGATTCCGGTGAGAAGGGGTTACTGGGGTAACAAG
ATCGGGAGGCCACACACCGTGCCGTGTAAGGTGACCGGTAAGTGTGGCAG
TGTCACCGTGAGGATGGTTCCCGGCCCCACGTGGTGCCGGAATTGTGGCG
CTAGGGCTTCAAC
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