BQ623628

Overview
NameBQ623628
Unique NameBQ623628
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length413
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623628 vs. ExPASy Swiss-Prot
Match: RS5_HALSA (30S ribosomal protein S5P OS=Halobacterium salinarium GN=rps5p PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.571e-19
Identity = 53/116 (45.69%), Postives = 73/116 (62.93%), Query Frame = 1
Query:   37 LPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRR--GYWGNKIGRPHTVPCKVTGKCGSVTVRMVPGP 378
            LP+KE +I+D L+   L DEV+ I  VQ+ T +G+R +F+  V +G+ DG+VG       +V  AI+ AI +AKL++I V R  G W    GRPHTV  K TGK GSV V ++P P
Sbjct:   33 LPLKEPEIVDQLLPG-LDDEVLDINMVQRMTDSGRRVKFRCVVAIGNRDGYVGYAEGRDDQVGGAIQKAIEVAKLNIIDVSRGCGSWECGCGRPHTVALKSTGKAGSVDVELMPAP 147          
BLAST of BQ623628 vs. ExPASy Swiss-Prot
Match: RS5_HALMA (30S ribosomal protein S5P OS=Haloarcula marismortui GN=rps5p PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.728e-19
Identity = 52/128 (40.62%), Postives = 77/128 (60.16%), Query Frame = 1
Query:    1 KIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRR--GYWGNKIGRPHTVPCKVTGKCGSVTVRMVPGP 378
            +I S+++     LP+KE +++D L+   L+DEV+ I  VQ+ T +G+R +F+  V VG+ DG +G       +V  AI+ AI +AKL++I V R  G W    GRPHTV  +  GK GSV V + P P
Sbjct:   21 EIDSMQEALNSGLPLKESEVVDQLVPD-LEDEVLDINMVQRMTDSGRRVKFRCVVAVGNRDGLIGYAEGRDDQVGGAIQKAIDIAKLNIIDVSRGCGSWECGCGRPHTVALRTEGKAGSVEVELQPAP 147          
BLAST of BQ623628 vs. ExPASy Swiss-Prot
Match: RS5_METB6 (30S ribosomal protein S5P OS=Methanoregula boonei (strain 6A8) GN=rps5p PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.411e-17
Identity = 48/128 (37.50%), Postives = 79/128 (61.72%), Query Frame = 1
Query:    1 KIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRR--GYWGNKIGRPHTVPCKVTGKCGSVTVRMVPGP 378
            +I+S++Q+     PIKE +I+D  +   L+DEV+ I  +Q+ T +G+R +F+A V+VG+ +G++G G     +V  AI+ AI  AK++++ VRR  G W       H++P +V G  GSV V + P P
Sbjct:   22 EIKSIDQVLESGRPIKEPEIVDMFLPD-LEDEVLDIAMMQRMTDSGRRVQFRAVVIVGNRNGYIGFGQGKDVQVGDAIKKAITKAKMNLVKVRRGCGSWECGCAVLHSIPMQVEGTAGSVRVTLKPAP 148          
BLAST of BQ623628 vs. ExPASy Swiss-Prot
Match: RS5_NATPD (30S ribosomal protein S5P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps5p PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.144e-17
Identity = 48/128 (37.50%), Postives = 79/128 (61.72%), Query Frame = 1
Query:    1 KIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI--PVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPGP 378
            +I S++      LP+KE +++D L+   L+DEV+ I  VQ+ T +G+R +F+  VV+G+ DG+VG       +V  AI+ AI +AKL++I  P+  G W ++ G  +++  + TGK GSV V + P P
Sbjct:   19 EITSMQDALQSGLPLKEPELVDQLLPG-LEDEVLDINMVQRMTDSGRRVKFRCVVVIGNRDGYVGYAQGRDDQVGGAIQKAIDVAKLNIIDVPLGSGSWEDRPGGRNSLMRRTTGKAGSVEVELKPAP 145          
BLAST of BQ623628 vs. ExPASy Swiss-Prot
Match: RS5_NANEQ (30S ribosomal protein S5P OS=Nanoarchaeum equitans GN=rps5p PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.661e-16
Identity = 52/141 (36.88%), Postives = 79/141 (56.03%), Query Frame = 1
Query:    1 KIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPV-------------QKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRR--GYWGNKIGRPHTVPCKVTGKCGSVTVRMVPGP 378
            KI ++++I  +   I+E +I+D L+ + L+ E MK   +             QK+T  G +TR++   +VGD DGHVG+G+  S ++  A   AI  AKL++I V R  G W    G PH++P +V GK GSV V + P P
Sbjct:   21 KITNIDEILSNKYVIREPEIVDVLLPN-LEVEFMKWRIIRGKFRSKKPYRMAQKKTAEGNKTRYEVIAIVGDKDGHVGVGLGRSSDLLIAREKAINRAKLNIIKVARGCGSWECACGAPHSIPYQVEGKSGSVRVILKPAP 160          
BLAST of BQ623628 vs. ExPASy Swiss-Prot
Match: RS5_HALWD (30S ribosomal protein S5P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps5p PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.011e-15
Identity = 47/127 (37.01%), Postives = 76/127 (59.84%), Query Frame = 1
Query:    4 IRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRR--GYWGNKIGRPHTVPCKVTGKCGSVTVRMVPGP 378
            + S+EQ     LP+KE +++D L+   L DEV+ I  VQ+ T +G+R +F+  V +G+ +G +G       +V +AI+ AI +AKL++I V R  G W +  G  +++     GK GSVTV ++P P
Sbjct:   26 VTSMEQALNSGLPLKEPELVDQLLPG-LDDEVLDINMVQRMTDSGRRVKFRCVVAIGNRNGFLGYAEGRDDQVGSAIQKAIDVAKLNLISVDRGSGSWEDSAGGVNSLTRNAEGKAGSVTVEVMPAP 151          
BLAST of BQ623628 vs. ExPASy Swiss-Prot
Match: RS5_CENSY (30S ribosomal protein S5P OS=Cenarchaeum symbiosum GN=rps5p PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.855e-15
Identity = 51/128 (39.84%), Postives = 75/128 (58.59%), Query Frame = 1
Query:    1 KIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRR--GYWGNKIGRPHTVPCKVTGKCGSVTVRMVPGP 378
            +I SLE+I      I+E  II  L+   LK EV+ +  +QK T  GQ TRFKA V  G+ +G++G+G   +K++  AI  A   A L+V P++   G W  +  + H+VP KV GK GSV + ++P P
Sbjct:   41 EITSLEEIQEAGARIQESGIIKKLLPD-LKTEVVDVGIIQKMTSNGQSTRFKAIVAAGNENGYLGIGQGKAKQMRIAIEKANNQALLNVGPIKLGCGSWECRCDQKHSVPFKVRGKGGSVVIEILPAP 167          

HSP 2 Score: 22.3274 bits (46), Expect = 1.855e-15
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 2
Query:  371 PAPRGAGIVALG 406
            PAPRG G+VA G
Sbjct:  165 PAPRGLGLVAGG 176          
The following BLAST results are available for this feature:
BLAST of BQ623628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
RS5_HALSA2.571e-1945.6930S ribosomal protein S5P OS=Halobacterium salinar... [more]
RS5_HALMA5.728e-1940.6330S ribosomal protein S5P OS=Haloarcula marismortu... [more]
RS5_METB61.411e-1737.5030S ribosomal protein S5P OS=Methanoregula boonei ... [more]
RS5_NATPD9.144e-1737.5030S ribosomal protein S5P OS=Natronomonas pharaoni... [more]
RS5_NANEQ2.661e-1636.8830S ribosomal protein S5P OS=Nanoarchaeum equitans... [more]
RS5_HALWD1.011e-1537.0130S ribosomal protein S5P OS=Haloquadratum walsbyi... [more]
RS5_CENSY1.855e-1539.8430S ribosomal protein S5P OS=Cenarchaeum symbiosum... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00719 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00719 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623628 ID=BQ623628; Name=BQ623628; organism=Citrus sinensis; type=EST; length=413bp
AAGATCAGGAGCCTCGAGCAAATCTACCTCCACTCGCTCCCAATCAAGGA
GTATCAAATCATCGACACGCTTATCGGCCACAAATTGAAGGACGAGGTCA
TGAAGATCATGCCGGTGCAGAAACAGACACGTGCCGGTCAGAGGACGAGG
TTCAAGGCCTTCGTCGTCGTCGGTGACACGGACGGCCACGTGGGTCTTGG
CGTTAAGTGCTCCAAAGAGGTTGCCACTGCCATCCGTGGCGCTATCATAT
TGGCGAAGCTGTCGGTGATTCCGGTGAGAAGGGGTTACTGGGGTAACAAG
ATCGGGAGGCCACACACCGTGCCGTGTAAGGTGACCGGTAAGTGTGGCAG
TGTCACCGTGAGGATGGTTCCCGGCCCCACGTGGTGCCGGAATTGTGGCG
CTAGGGCTTCAAC
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