BQ623671

Overview
NameBQ623671
Unique NameBQ623671
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Match: ODPB_RHIME (Pyruvate dehydrogenase E1 component subunit beta OS=Rhizobium meliloti GN=pdhB PE=3 SV=2)

HSP 1 Score: 204.142 bits (518), Expect = 6.333e-52
Identity = 103/180 (57.22%), Postives = 135/180 (75.00%), Query Frame = 2
Query:    2 SSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYR 541
            ++ DA+GLLKAAIRDP+PV+FLENE+LYG+SF V    LD  F LPIGKA+I R GKD T+ +F   +  ++KAA  L  +GI  E+I+LR+IRP+D  T+  SV+KT RLVTVEEG+PQ  VG EI   V++++F YLDAP+  IAG DVPMPYAANLE++A+P V ++V A K  CY+
Sbjct:  284 TAADAKGLLKAAIRDPNPVIFLENEILYGQSFEVPK--LDD-FVLPIGKARIHRTGKDATLVSFGIGMTYAIKAAAELEAQGIDVEIIDLRTIRPMDLPTVIESVKKTGRLVTVEEGYPQSSVGTEIATRVMQQAFDYLDAPILTIAGKDVPMPYAANLEKLALPNVAEVVDAVKAVCYK 460          
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Match: ODPB_CAEEL (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Caenorhabditis elegans GN=C04C3.3 PE=1 SV=2)

HSP 1 Score: 199.134 bits (505), Expect = 2.037e-50
Identity = 104/178 (58.43%), Postives = 132/178 (74.16%), Query Frame = 2
Query:    2 SSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRA 532
            S+EDA+GLLKAAIRD +PVVFLENE+LYG+SFPV  EVL   F +PIGKAKIER G  VTI ++S+ V  SL+AA+ L   G+SAEVINLRS+RP D  +I  SV KT+ LV+VE G+P  G+G+EI A V+E + F  LDAP+ R+ G DVPMPY   LE  A+P  E +V+A K++
Sbjct:  171 SAEDAKGLLKAAIRDDNPVVFLENEILYGQSFPVGDEVLSDDFVVPIGKAKIERAGDHVTIVSYSRGVEFSLEAAKQLEAIGVSAEVINLRSLRPFDFESIRQSVHKTHHLVSVETGWPFAGIGSEIAAQVMESDVFDQLDAPLLRVTGVDVPMPYTQTLEAAALPTAEHVVKAVKKS 348          
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Match: ODPB_ASCSU (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Ascaris suum PE=1 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.321e-49
Identity = 103/175 (58.86%), Postives = 124/175 (70.86%), Query Frame = 2
Query:    8 EDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKR 529
            EDARGLLKAA+RD +PV+ LENE+LYG  FPVS E     F LP G+AKI+R GKD+TI + S  V +SL AA+ LAK GI  EVINLR +RPLD  T+  SV KT  LVTVE G+P  GVGAEI A V E ++F YLD P+ R+ G DVPMPYA  LE  A+PQ  D+V+  K+
Sbjct:  182 EDARGLLKAAVRDDNPVICLENEILYGMKFPVSPEAQSPDFVLPFGQAKIQRPGKDITIVSLSIGVDVSLHAADELAKSGIDCEVINLRCVRPLDFQTVKDSVIKTKHLVTVESGWPNCGVGAEISARVTESDAFGYLDGPILRVTGVDVPMPYAQPLETAALPQPADVVKMVKK 356          
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Match: ODPB_ZYMMO (Pyruvate dehydrogenase E1 component subunit beta OS=Zymomonas mobilis GN=pdhB PE=3 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 3.253e-48
Identity = 102/177 (57.63%), Postives = 126/177 (71.19%), Query Frame = 2
Query:   11 DARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYR 541
            DA+GLLKAAIR  DPVVFLE ELLYG++F V        F LPIGKA+I REGKDVTI ++S  V  +L AAE LAKEGI AEVI+LR++RPLD+ TI  S+ KTNR+VTVE+G+P   + +EI A  +EE F  LDAPV R+  AD P PYA NLE+  +   E I+ A ++ CYR
Sbjct:  288 DAKGLLKAAIRSDDPVVFLECELLYGKTFDVPKM---DDFVLPIGKARIIREGKDVTIVSYSIGVSFALTAAEALAKEGIDAEVIDLRTLRPLDKETILQSLAKTNRIVTVEDGWPVCSISSEIAAIAMEEGFDNLDAPVLRVTNADTPTPYAENLEKKGLVNPEAIIEAVRKVCYR 461          
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Match: ODPB_RICFE (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia felis GN=pdhB PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.754e-47
Identity = 97/182 (53.30%), Postives = 129/182 (70.88%), Query Frame = 2
Query:    2 SSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYRSV 547
            S+ED +GL+  AIRD +PV+FLENE+LYG SF V   +      +P G+AKI REG  VTI  FS  V L+L AA +L  + I  EVI+LR+I+PLD  TI  SV+KTNRLV VEEG+   GVGA I + V++E+F YLDAP+E ++G DVP+P+A NLE++A+P   D++ A K+ CY SV
Sbjct:  149 SAEDHKGLMLTAIRDDNPVIFLENEILYGHSFDVPETIEP----IPFGQAKILREGSSVTIVTFSIQVKLALDAANVLQNDNIDCEVIDLRTIKPLDTDTIIESVKKTNRLVIVEEGWFFAGVGASIASIVMKEAFDYLDAPIEIVSGKDVPLPFAVNLEKLALPSESDVIEAVKKVCYYSV 326          
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Match: ODPB_RICBR (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia bellii (strain RML369-C) GN=pdhB PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 8.012e-47
Identity = 96/179 (53.63%), Postives = 128/179 (71.51%), Query Frame = 2
Query:    2 SSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACY 538
            S+ED +GL+  AIRD +PV+FLENE+LYG SF +S  V      +P GKAK+ +EG  VTI  FS  V L+L AA IL  + I+ EVI+LR+I+PLD  TI  SV+KT RLV +EEG+   G+GA I A V++E+F YLDAPVE ++G DVP+PYA NLE++A+P   D++ A K+ CY
Sbjct:  149 SAEDHKGLMITAIRDDNPVIFLENEILYGHSFDISENVEP----IPFGKAKVLKEGDSVTIVTFSIQVKLALDAANILQSDNINCEVIDLRTIKPLDIDTIIESVKKTGRLVVIEEGWFFAGIGATIAAIVMKEAFDYLDAPVEIVSGKDVPLPYAVNLEKLALPSEYDVINAVKKVCY 323          
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Match: ODPB_RICCN (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia conorii GN=pdhB PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.785e-46
Identity = 96/182 (52.75%), Postives = 127/182 (69.78%), Query Frame = 2
Query:    2 SSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYRSV 547
            S+ED +GL+  AIRD +PVVFLENE+LYG SF V   +      +P G+AKI REG  VTI  FS  V L+L AA  +  + I  EVI+LR+I+PLD  TI  SV+KTNRLV VEEG+   GVGA I + V++E+F YLDAP+E ++G D+P+PYA NLE +A+P   D++ A K+ CY S+
Sbjct:  149 SAEDHKGLMLTAIRDDNPVVFLENEILYGHSFDVPKTIEP----IPFGQAKILREGSSVTIVTFSIQVKLALDAANFVQNDNIDCEVIDLRTIKPLDTETIIESVKKTNRLVVVEEGWFFAGVGASIASIVMKEAFDYLDAPIEIVSGKDLPLPYAVNLETLALPSESDVIEAVKKVCYYSI 326          
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Match: ODPB_RICPR (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia prowazekii GN=pdhB PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.157e-45
Identity = 93/182 (51.10%), Postives = 130/182 (71.43%), Query Frame = 2
Query:    2 SSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYRSV 547
            S+ED +GL+  AIRD +PV+FLENE+LYG SF V  ++++    +P  KAKI +EG +VTI  FS  V L+L    IL  + I  E+I+LR+I+PLD  +I  SV+KTNRLV VEEG+   GVGA I + V++E+F YLDAP+E ++G DVP+PYA NLE++A+P   D++ A K+ CY S+
Sbjct:  149 SAEDHKGLMLTAIRDDNPVIFLENEILYGHSFDVP-DIIEP---IPFSKAKILKEGSNVTIVTFSIQVKLALDVVNILQNDNIDCELIDLRTIKPLDTDSIIESVKKTNRLVIVEEGWFFAGVGASIASIVMKEAFDYLDAPIEIVSGKDVPLPYAVNLEKLAMPSANDLIEAVKKVCYYSI 326          
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Match: ODPB_RICTY (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia typhi GN=pdhB PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.366e-45
Identity = 92/182 (50.55%), Postives = 130/182 (71.43%), Query Frame = 2
Query:    2 SSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYRSV 547
            S+ED +GL+  AIRD +PV+FLENE+LYG SF V  ++++    +P  KAKI +EG +VTI  FS  V L+L    IL  + I  E+I+LR+I+PLD + I  SV+KTNRLV VEEG+   GVGA I + V++E+F YLDAP+E ++G DVP+PYA NLE++A+P   D++ A K+ CY ++
Sbjct:  149 SAEDHKGLMLTAIRDDNPVIFLENEILYGHSFDVP-DIIEP---IPFSKAKILKEGSNVTIVTFSIQVKLALDVVNILQNDNIDCELIDLRTIKPLDTNMIIESVKKTNRLVIVEEGWFFAGVGASIASIVMKEAFDYLDAPIEIVSGKDVPLPYAVNLEKLAMPSANDLIEAVKKVCYYTI 326          
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Match: ODPB_BACST (Pyruvate dehydrogenase E1 component subunit beta OS=Bacillus stearothermophilus GN=pdhB PE=1 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.567e-34
Identity = 83/173 (47.98%), Postives = 114/173 (65.90%), Query Frame = 2
Query:   11 DARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKR 529
            DA+GLL +AIRD DPV+FLE+  LY  SF    EV +  + +PIGKA I+REGKD+TI A+  +V  SLKAA  L KEGISAEV++LR+++PLD  TI  SV KT R + V+E   Q G+ A + A + E +   L+APV R+A  D   P+ A  E + +P  +D++  AK+
Sbjct:  153 DAKGLLISAIRDNDPVIFLEHLKLY-RSF--RQEVPEGEYTIPIGKADIKREGKDITIIAYGAMVHESLKAAAELEKEGISAEVVDLRTVQPLDIETIIGSVEKTGRAIVVQEAQRQAGIAANVVAEINERAILSLEAPVLRVAAPDTVYPF-AQAESVWLPNFKDVIETAKK 321          
The following BLAST results are available for this feature:
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
ODPB_RHIME6.333e-5257.22Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CAEEL2.037e-5058.43Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_ASCSU1.321e-4958.86Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_ZYMMO3.253e-4857.63Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICFE2.754e-4753.30Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICBR8.012e-4753.63Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICCN1.785e-4652.75Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICPR1.157e-4551.10Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICTY3.366e-4550.55Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_BACST1.567e-3447.98Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00762 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00762 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623671 ID=BQ623671; Name=BQ623671; organism=Citrus sinensis; type=EST; length=741bp
CAGTTCTGAAGATGCTCGTGGACTGCTAAAAGCTGCTATAAGGGATCCGG
ATCCTGTTGTTTTTCTTGAAAATGAGTTGTTATATGGTGAGTCATTCCCG
GTATCAGCTGAAGTTCTTGATTCCAGTTTTTGCCTTCCAATTGGGAAAGC
TAAAATTGAGAGAGAAGGAAAGGATGTAACCATTACAGCTTTCTCAAAAA
TTGTGGGCCTTTCACTCAAGGCGGCTGAGATACTTGCAAAGGAAGGAATA
AGTGCTGAGGTTATCAATCTGCGGTCAATTAGGCCACTAGATAGATCCAC
AATCAATGCTTCTGTCAGAAAAACTAACAGACTGGTAACAGTTGAAGAAG
GGTTCCCTCAGCATGGAGTTGGTGCCGAAATCTGTGCATCCGTTATTGAG
GAAAGCTTCAGTTATCTTGATGCACCAGTTGAGAGAATTGCTGGAGCTGA
TGTTCCAATGCCATATGCAGCCAATCTTGAGAGAATGGCTGTCCCACAGG
TTGAAGATATTGTCCGAGCTGCCAAGAGAGCATGCTACAGATCTGTGCCA
ATGGCTGCTGCAGCATAAAAGAACTGATTCTGCCCTGAAGCTTTGTCAGA
TCCTGGAACAATAGAGGGATTGTACATTTTTCCCATTCTCAACACTTTTT
TGGGGGAATTGATCATGAAATAATTGGAGATTGGTGATGACAGCAGGAAA
TTTTGTGGCTCAGTTTTCTCTTGTTAATGTGGAAATCAACA
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