BQ623671

Overview
NameBQ623671
Unique NameBQ623671
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Match: DXS_SYNS9 (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. (strain CC9902) GN=dxs PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.992e-13
Identity = 42/112 (37.50%), Postives = 67/112 (59.82%), Query Frame = 2
Query:  134 LPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYA 469
            LPIG+ ++ REG D+ I A+  +V  +++ A +L   G+SA VIN R +RPLD++ I+   R+  R+VT+EEG    G GA +  S+ +     ++ PV RI   D  + +A
Sbjct:  493 LPIGRGELLREGNDLVIVAYGSMVAPAMETAALLEASGLSASVINARFLRPLDQALIHPLARRVPRVVTMEEGTLSGGFGAAVLESLNDHD---INVPVLRIGIPDQLVDHA 601          
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Match: DXS_SYNP2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=dxs PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.601e-13
Identity = 46/135 (34.07%), Postives = 73/135 (54.07%), Query Frame = 2
Query:  134 LPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAV-----PQVEDIVRAA 523
            LPIGK +I R G D+ +  +  +V  +L+ AEIL++ GISA VIN R ++PLD   I    ++  ++ T EEG    G G+ +C ++ +     +  PV+R    DV + +A   E  A       Q+ + +RAA
Sbjct:  494 LPIGKGEILRNGDDILLIGYGAMVHSTLQVAEILSEHGISATVINARFVKPLDSELIAPLAKQIGKVATFEEGCLMGGFGSAVCEALQDHD---VLVPVKRFGIGDVLVDHATPAESKAAHGLTPAQMAESIRAA 625          
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Match: DXS_SYNJB (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. GN=dxs PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.601e-13
Identity = 46/119 (38.66%), Postives = 69/119 (57.98%), Query Frame = 2
Query:  134 LPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMA 490
            LPIGKA++ R G +V I A+  +V  SL+AAEIL + GISA V+N R  +PLD   I     ++  +VTVEEG    G G+ +  ++++     L  P+ R+   DV + +A   E +A
Sbjct:  499 LPIGKAEVLRSGGEVLILAYGSMVHPSLQAAEILKEHGISATVVNARFAKPLDTELILPLAEQSRLVVTVEEGCLMGGFGSAVAEALLDAD---LAVPLLRLGVPDVWVEHATPEESLA 614          
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Match: DXS_SYNPX (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. (strain WH8102) GN=dxs PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.437e-13
Identity = 48/134 (35.82%), Postives = 72/134 (53.73%), Query Frame = 2
Query:  134 LPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGAD------VPMPYAANLERMAVPQVEDIVR 517
            LPIG+ ++ REG D+ I A+  +V  +L  A +L + G+S  VIN R +RPLD++ I+   R+  R+VT+EEG    G GA +  S+ ++  S    P+ RI   D       P     +LE + V   E I R
Sbjct:  493 LPIGRGELLREGDDLLIVAYGSMVHPALDTATLLEEAGLSTTVINARFLRPLDQALIHPLARRIRRVVTMEEGALAGGFGAAVLESLSDQDIS---IPLLRIGIPDKMVDHATPQQSKESLEMIPVQMAERIRR 623          
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Match: DXS_HELMI (1-deoxy-D-xylulose-5-phosphate synthase OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=dxs PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.437e-13
Identity = 37/83 (44.58%), Postives = 55/83 (66.27%), Query Frame = 2
Query:  134 LPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEI 382
            +PIG+ ++ R+G DVTI A   +VG++ +AA++L  EGI A V+N R ++PLD+  I    R+T R+VTVEE     G G+ I
Sbjct:  489 VPIGRGELLRQGSDVTIVAIGAMVGIAEEAADLLEAEGIRAAVVNARFVKPLDKELIIKQARETGRIVTVEEHVLAGGFGSAI 571          
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Match: DXS_DESHY (1-deoxy-D-xylulose-5-phosphate synthase OS=Desulfitobacterium hafniense (strain Y51) GN=dxs PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.437e-13
Identity = 50/143 (34.97%), Postives = 75/143 (52.45%), Query Frame = 2
Query:   11 DARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERI 439
            + R +L  +++   PV      L Y  S     E+ +    LP+GKA+I +EGKD+T+     +V   L AA  L   G+ A VINLR I PLDR +I    R T R++TVE+     G+G+ +   + +E  +  D  VER+
Sbjct:  452 ELRHMLYTSLQLDGPVA-----LRYPRSVGQGVELTEELRELPVGKAEILQEGKDITLIGVGPMVYTCLAAAVELRHRGVEATVINLRYINPLDRESILRYARMTKRIITVEDHMLAGGMGSAVMEVLGDEGLT--DVVVERL 587          
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Match: DXS_DESHD (1-deoxy-D-xylulose-5-phosphate synthase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=dxs PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.437e-13
Identity = 50/143 (34.97%), Postives = 75/143 (52.45%), Query Frame = 2
Query:   11 DARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERI 439
            + R +L  +++   PV      L Y  S     E+ +    LP+GKA+I +EGKD+T+     +V   L AA  L   G+ A VINLR I PLDR +I    R T R++TVE+     G+G+ +   + +E  +  D  VER+
Sbjct:  452 ELRHMLYTSLQLDGPVA-----LRYPRSVGQGVELTEELRELPVGKAEILQEGKDITLIGVGPMVYTCLAAAVELRHRGVEATVINLRYINPLDRESILRYARMTKRIITVEDHMLAGGMGSAVMEVLGDEGLT--DVVVERL 587          
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Match: DXS_ANAVT (1-deoxy-D-xylulose-5-phosphate synthase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=dxs PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.437e-13
Identity = 46/119 (38.66%), Postives = 68/119 (57.14%), Query Frame = 2
Query:  134 LPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMA 490
            L IGK +I R G DV I  +  +V  S++AAEIL++ GI A VIN R ++PLD   I    +K  R+VT+EEG    G G+ +  ++++     +  PV+RI   DV + +A   E  A
Sbjct:  494 LEIGKGEILRNGDDVLIIGYGTMVYPSMQAAEILSEHGIEATVINARFVKPLDTELIVPLAQKIGRVVTLEEGCVMGGFGSAVAEALLDAD---VVVPVKRIGIPDVLVEHATPDESKA 609          
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Match: DXS_ANASP (1-deoxy-D-xylulose-5-phosphate synthase OS=Anabaena sp. (strain PCC 7120) GN=dxs PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.437e-13
Identity = 46/119 (38.66%), Postives = 68/119 (57.14%), Query Frame = 2
Query:  134 LPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMA 490
            L IGK +I R G DV I  +  +V  S++AAEIL++ GI A VIN R ++PLD   I    +K  R+VT+EEG    G G+ +  ++++     +  PV+RI   DV + +A   E  A
Sbjct:  494 LEIGKGEILRNGDDVLIIGYGTMVYPSMQAAEILSEHGIEATVINARFVKPLDTELIVPLAQKIGRVVTLEEGCVMGGFGSAVAEALLDAD---VVVPVKRIGIPDVLVEHATPDESKA 609          
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Match: DXS_SYNSC (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. (strain CC9605) GN=dxs PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.885e-13
Identity = 40/109 (36.70%), Postives = 65/109 (59.63%), Query Frame = 2
Query:   86 GESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFS 412
            GE  P+  E  ++   LPIG+ ++ REG D+ I A+  +V  +L  A +L + G+S  VIN R +RPLD++ I+   R+  R+VT+EEG    G GA +  S+ ++  +
Sbjct:  480 GEGVPLMEEGWET---LPIGRGELLREGDDLMIVAYGSMVAPALATATLLEEAGLSTTVINARFLRPLDQALIHPLARRIPRVVTMEEGALPGGFGAAVLESLTDQDIN 585          
The following BLAST results are available for this feature:
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
DXS_SYNS91.992e-1337.501-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]
DXS_SYNP22.601e-1334.071-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]
DXS_SYNJB2.601e-1338.661-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]
DXS_SYNPX4.437e-1335.821-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]
DXS_HELMI4.437e-1344.581-deoxy-D-xylulose-5-phosphate synthase OS=Helioba... [more]
DXS_DESHY4.437e-1334.971-deoxy-D-xylulose-5-phosphate synthase OS=Desulfi... [more]
DXS_DESHD4.437e-1334.971-deoxy-D-xylulose-5-phosphate synthase OS=Desulfi... [more]
DXS_ANAVT4.437e-1338.661-deoxy-D-xylulose-5-phosphate synthase OS=Anabaen... [more]
DXS_ANASP4.437e-1338.661-deoxy-D-xylulose-5-phosphate synthase OS=Anabaen... [more]
DXS_SYNSC9.885e-1336.701-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00762 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00762 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623671 ID=BQ623671; Name=BQ623671; organism=Citrus sinensis; type=EST; length=741bp
CAGTTCTGAAGATGCTCGTGGACTGCTAAAAGCTGCTATAAGGGATCCGG
ATCCTGTTGTTTTTCTTGAAAATGAGTTGTTATATGGTGAGTCATTCCCG
GTATCAGCTGAAGTTCTTGATTCCAGTTTTTGCCTTCCAATTGGGAAAGC
TAAAATTGAGAGAGAAGGAAAGGATGTAACCATTACAGCTTTCTCAAAAA
TTGTGGGCCTTTCACTCAAGGCGGCTGAGATACTTGCAAAGGAAGGAATA
AGTGCTGAGGTTATCAATCTGCGGTCAATTAGGCCACTAGATAGATCCAC
AATCAATGCTTCTGTCAGAAAAACTAACAGACTGGTAACAGTTGAAGAAG
GGTTCCCTCAGCATGGAGTTGGTGCCGAAATCTGTGCATCCGTTATTGAG
GAAAGCTTCAGTTATCTTGATGCACCAGTTGAGAGAATTGCTGGAGCTGA
TGTTCCAATGCCATATGCAGCCAATCTTGAGAGAATGGCTGTCCCACAGG
TTGAAGATATTGTCCGAGCTGCCAAGAGAGCATGCTACAGATCTGTGCCA
ATGGCTGCTGCAGCATAAAAGAACTGATTCTGCCCTGAAGCTTTGTCAGA
TCCTGGAACAATAGAGGGATTGTACATTTTTCCCATTCTCAACACTTTTT
TGGGGGAATTGATCATGAAATAATTGGAGATTGGTGATGACAGCAGGAAA
TTTTGTGGCTCAGTTTTCTCTTGTTAATGTGGAAATCAACA
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