BQ623688

Overview
NameBQ623688
Unique NameBQ623688
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length442
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623688 vs. ExPASy Swiss-Prot
Match: THS_METTL (Thermosome subunit OS=Methanococcus thermolithotrophicus GN=ths PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.784e-15
Identity = 40/83 (48.19%), Postives = 57/83 (68.67%), Query Frame = 2
Query:    2 AEALEVIPYTLAENAGLNPLAIVTELRNRHAQGE-INSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIV 247
            A+ALEV+P TLAENAGL+ + ++ +LR +HA+G     G+NV  G + N+ E  VV+PL V T AI  A E   M+L+IDD++
Sbjct:  436 ADALEVVPRTLAENAGLDAIEMLVKLRAKHAEGNNAYYGLNVFTGDVENMTENGVVEPLRVKTQAIQSATEATEMLLRIDDVI 518          
BLAST of BQ623688 vs. ExPASy Swiss-Prot
Match: THSB_THEAC (Thermosome subunit beta OS=Thermoplasma acidophilum GN=thsB PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.683e-14
Identity = 38/85 (44.71%), Postives = 57/85 (67.06%), Query Frame = 2
Query:    2 AEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 256
            A+A+E IP  LAENAGL+P+ I+ +LR  HA+G    GINV  G+I ++++  V++P+ V   AI  A E   MIL+IDD++  +
Sbjct:  439 ADAIEEIPRALAENAGLDPIDILLKLRAEHAKGNKTYGINVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVIATK 523          
BLAST of BQ623688 vs. ExPASy Swiss-Prot
Match: THSA_HALSA (Thermosome subunit alpha OS=Halobacterium salinarium GN=thsA PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.683e-14
Identity = 37/82 (45.12%), Postives = 56/82 (68.29%), Query Frame = 2
Query:    2 AEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIV 247
            A+ALEVIP TLAENAG +P+  + +LR++H  G+  +G++   G + ++  E +V+PL V T AI  A E   MIL+IDD++
Sbjct:  438 ADALEVIPRTLAENAGHDPIDSLVDLRSQHDGGDTEAGLDAYNGDVIDMESEGIVEPLRVKTQAIESATEAATMILRIDDVI 519          
BLAST of BQ623688 vs. ExPASy Swiss-Prot
Match: THS_METJA (Thermosome subunit OS=Methanocaldococcus jannaschii GN=ths PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 8.352e-14
Identity = 40/84 (47.62%), Postives = 62/84 (73.81%), Query Frame = 2
Query:    2 AEALEVIPYTLAENAGLNPLAIVTELRNRHAQ--GEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIV 247
            A+ALEVIP TLAEN+GL+P+ ++ +LR  H +  GE+  G++V +G++ ++LE+ VV+PL V T AI  A E   M+L+IDD++
Sbjct:  438 ADALEVIPRTLAENSGLDPIDMLVKLRAAHEKEGGEVY-GLDVFEGEVVDMLEKGVVEPLKVKTQAIDSATEASVMLLRIDDVI 520          
BLAST of BQ623688 vs. ExPASy Swiss-Prot
Match: TCPD_ENCCU (T-complex protein 1 subunit delta OS=Encephalitozoon cuniculi GN=CCT4 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.430e-13
Identity = 44/86 (51.16%), Postives = 59/86 (68.60%), Query Frame = 2
Query:    2 AEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNIL-EENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 256
            A+A E +PY LA NAGL P+ IV+ELR+   Q    +GI+VR G   +++ +++VVQP  VS S +TLA E V MILKIDDI+  R
Sbjct:  399 AKAFEGVPYFLARNAGLYPVEIVSELRSELKQN-CCAGISVRSGHAGDMVRDDSVVQPAKVSISVVTLALETVSMILKIDDILPAR 483          
BLAST of BQ623688 vs. ExPASy Swiss-Prot
Match: THSA_SULAC (Thermosome subunit alpha OS=Sulfolobus acidocaldarius GN=thsA PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 3.174e-13
Identity = 38/83 (45.78%), Postives = 56/83 (67.47%), Query Frame = 2
Query:    2 AEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQIT-NILEENVVQPLLVSTSAITLAAECVRMILKIDDIV 247
            AEALE IP  LAE AG+ P+  + +LR RHA+G +NSGI+   G+I  ++++ NV++P+ V +  +  A E    ILKIDD+V
Sbjct:  447 AEALEEIPMILAETAGMEPIQALMDLRARHAKGLVNSGIDAVNGKIADDMMKINVIEPVRVKSQVLKSAVEAATAILKIDDLV 529          
BLAST of BQ623688 vs. ExPASy Swiss-Prot
Match: THSA_SULTO (Thermosome subunit alpha OS=Sulfolobus tokodaii GN=thsA PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 9.234e-13
Identity = 37/83 (44.58%), Postives = 55/83 (66.27%), Query Frame = 2
Query:    2 AEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQIT-NILEENVVQPLLVSTSAITLAAECVRMILKIDDIV 247
            AEALE IP  LAE AG+ P+  + +LR +HA+G IN+G++V  G+I  ++L  NV++P+ V    +  A E    ILKIDD++
Sbjct:  447 AEALEEIPMILAETAGMEPIQTLMDLRAKHAKGLINAGVDVMNGKIADDMLALNVLEPVRVKAQVLKSAVEAATAILKIDDLI 529          
BLAST of BQ623688 vs. ExPASy Swiss-Prot
Match: THSA_THEAC (Thermosome subunit alpha OS=Thermoplasma acidophilum GN=thsA PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.206e-12
Identity = 34/82 (41.46%), Postives = 55/82 (67.07%), Query Frame = 2
Query:    2 AEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIV 247
            A+ALE+IP TLAENAG++P+  + +L+  H +G I+ G+++    + ++  + VV PL V T A+  A E   MIL+IDD++
Sbjct:  438 AKALEIIPRTLAENAGIDPINTLIKLKAEHEKGRISVGVDLDNNGVGDMKAKGVVDPLRVKTHALESAVEVATMILRIDDVI 519          
BLAST of BQ623688 vs. ExPASy Swiss-Prot
Match: THSA_METTH (Thermosome subunit alpha OS=Methanobacterium thermoautotrophicum GN=thsA PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.575e-12
Identity = 38/87 (43.68%), Postives = 55/87 (63.22%), Query Frame = 2
Query:    2 AEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR*F 262
            A+ALE++P TLAENAGL+ + ++ +LR  H +     GI+V  G I ++ E  V++P  V   AI  AAE   MIL+IDD++  R F
Sbjct:  434 ADALEIVPKTLAENAGLDSIDVLVDLRAAHEESPY-MGIDVFDGNIVDMKEAGVIEPQRVKKQAIQSAAEAAEMILRIDDMIAARGF 519          
BLAST of BQ623688 vs. ExPASy Swiss-Prot
Match: THSB_METTH (Thermosome subunit beta OS=Methanobacterium thermoautotrophicum GN=thsB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.687e-12
Identity = 37/82 (45.12%), Postives = 54/82 (65.85%), Query Frame = 2
Query:    2 AEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIV 247
            AEALE++P TLAENAGL+ + ++ +LR  H +     GI+V  G+I ++ E  V++P  V   AI  AAE   MIL+IDD++
Sbjct:  434 AEALEIVPKTLAENAGLDSIDVLVDLRAAHEESTY-MGIDVFDGKIVDMKEAGVIEPHRVKKQAIQSAAEAAEMILRIDDVI 514          
The following BLAST results are available for this feature:
BLAST of BQ623688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
THS_METTL5.784e-1548.19Thermosome subunit OS=Methanococcus thermolithotro... [more]
THSB_THEAC1.683e-1444.71Thermosome subunit beta OS=Thermoplasma acidophilu... [more]
THSA_HALSA1.683e-1445.12Thermosome subunit alpha OS=Halobacterium salinari... [more]
THS_METJA8.352e-1447.62Thermosome subunit OS=Methanocaldococcus jannaschi... [more]
TCPD_ENCCU2.430e-1351.16T-complex protein 1 subunit delta OS=Encephalitozo... [more]
THSA_SULAC3.174e-1345.78Thermosome subunit alpha OS=Sulfolobus acidocaldar... [more]
THSA_SULTO9.234e-1344.58Thermosome subunit alpha OS=Sulfolobus tokodaii GN... [more]
THSA_THEAC1.206e-1241.46Thermosome subunit alpha OS=Thermoplasma acidophil... [more]
THSA_METTH1.575e-1243.68Thermosome subunit alpha OS=Methanobacterium therm... [more]
THSB_METTH2.687e-1245.12Thermosome subunit beta OS=Methanobacterium thermo... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00779 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00779 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623688 ID=BQ623688; Name=BQ623688; organism=Citrus sinensis; type=EST; length=442bp
TGCAGAGGCACTTGAGGTTATTCCCTATACTTTGGCTGAGAATGCTGGGT
TGAACCCGCTTGCCATTGTGACTGAACTGAGGAACAGGCATGCACAAGGG
GAAATCAATTCTGGAATCAATGTGAGGAAGGGGCAGATTACCAATATTTT
GGAGGAGAATGTGGTGCAGCCACTGCTTGTGAGCACAAGTGCAATAACAC
TGGCTGCAGAGTGTGTAAGGATGATTTTGAAGATTGATGACATCGTTACT
GTGAGGTAGTTTTGCATCCAAAGATGAAAGTGTGTTCCCTACTTATGTTT
TGCGTCCTTGTATTATCTGAATTAGTAAGCTCTGTTTTAGGATTGATTGC
TGTTAAGAGTTTTGACTTTGTTATTTTTGTTGCCAAATATTTGGTTTGAA
TTTGCTGTTTTATGGTTAATTAGCAGTCGAATGACTGATTAA
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