BQ623733

Overview
NameBQ623733
Unique NameBQ623733
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length587
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of BQ623733 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.378e-14
Identity = 52/141 (36.88%), Postives = 72/141 (51.06%), Query Frame = 3 
Query:    6 WFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 401
            WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G    +    Y GGS DP              +D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:  132 WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG----GPLGE---VVDPLYPGGSFDPL----------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
[Close]
BLAST of BQ623733 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.378e-14
Identity = 52/141 (36.88%), Postives = 72/141 (51.06%), Query Frame = 3 
Query:    6 WFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 401
            WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G    +    Y GGS DP              +D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:  131 WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG----GPLGE---VVDPLYPGGSFDPL----------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
[Close]
BLAST of BQ623733 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.411e-14
Identity = 52/141 (36.88%), Postives = 71/141 (50.35%), Query Frame = 3 
Query:    6 WFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 401
            WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G    +    Y GGS DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:  132 WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG----GPLGE---VVDPLYPGGSFDPL----------GLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
[Close]
BLAST of BQ623733 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.411e-14
Identity = 52/141 (36.88%), Postives = 72/141 (51.06%), Query Frame = 3 
Query:    6 WFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 401
            WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G    +    Y GGS DP              +D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:  130 WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAG----GPLGE---VVDPLYPGGSFDPL----------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
[Close]
BLAST of BQ623733 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.761e-14
Identity = 38/75 (50.67%), Postives = 49/75 (65.33%), Query Frame = 3 
Query:  177 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 401
            Y GGS DP              +D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:   40 YPGGSFDPL----------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 104
[Close]
BLAST of BQ623733 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.761e-14
Identity = 38/75 (50.67%), Postives = 49/75 (65.33%), Query Frame = 3 
Query:  177 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 401
            Y GGS DP              +D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:  189 YPGGSFDPL----------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
[Close]
BLAST of BQ623733 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.761e-14
Identity = 52/141 (36.88%), Postives = 71/141 (50.35%), Query Frame = 3 
Query:    6 WFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 401
            WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G    +    Y GGS DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:  132 WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAG----GPLGE---VVDPLYPGGSFDPL----------GLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
[Close]
BLAST of BQ623733 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.761e-14
Identity = 38/75 (50.67%), Postives = 49/75 (65.33%), Query Frame = 3 
Query:  177 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 401
            Y GGS DP              +D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:  189 YPGGSFDPL----------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
[Close]
BLAST of BQ623733 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.761e-14
Identity = 52/141 (36.88%), Postives = 71/141 (50.35%), Query Frame = 3 
Query:    6 WFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 401
            WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G    +    Y GGS DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP  NL+DHLADPVNNN
Sbjct:  132 WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAG----GPLGE---VTDPLYPGGSFDPL----------GLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVNNN 255
[Close]
BLAST of BQ623733 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.761e-14
Identity = 52/141 (36.88%), Postives = 71/141 (50.35%), Query Frame = 3 
Query:    6 WFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 401
            WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G    +    Y GGS DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:  132 WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG----GPLGE---VVDPLYPGGSFDPL----------GLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
The following BLAST results are available for this feature:
BLAST of BQ623733 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
CB24_TOBAC3.378e-1436.88Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB21_TOBAC3.378e-1436.88Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB2G_SOLLC4.411e-1436.88Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB22_TOBAC4.411e-1436.88Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB2D_SOLLC5.761e-1450.67Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC5.761e-1450.67Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SPIOL5.761e-1436.88Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2A_SOLLC5.761e-1450.67Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB27_TOBAC5.761e-1436.88Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB25_PETSP5.761e-1436.88Chlorophyll a-b binding protein 91R, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00824 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00824 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623733 ID=BQ623733; Name=BQ623733; organism=Citrus sinensis; type=EST; length=587bp
TGGCCTGGTTCCAAACCGGTGTGATCCCCCCAGCGGGAACATACAACTAC
TGGGCAGACCCTTACACACTTTTCGTCCTGGAAATGGCACTCATGGGATT
TGCCGAGCACCGGAGATTCCAAGACTGGGCAAATCCAGGATCAATGGGCA
GGCAATACTTCCTCGGATTCGAGAAATACTTGGGAGGATCCGGCGATCCG
GCTTACCCTGGAGGACCTCTATTCAACCCTCTGGGTCTTGGGAAAGATGA
GAAGTCAATGAAGGATTTCAAGCTCAAGGAAGTGAAGAATGGAAGATTGG
CAATGTTGGCAATCTTGGGTTACTTTGTTCAAGGTCTTGTTACAGGAGTT
GGGCCTTACCAGAACCTATTGGATCACTTGGCTGATCCTGTAAACAACAA
TGTTTTGACTAGCCTCAAGTTTCACTGAGAGAGAAATTTCTTGTTCATTG
CTTGGAATTATATATTCCAAGCCTTGTCATCCCCCACTCTGTTCTATTCT
ACTTTCCCCATTGTAAAATTATCTATGTGAAAAGTGAATGTAACTTGGCG
GAAATGACATGTTAATTGCTAAAAAAAAAAAAAAAAA
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