BQ623733

Overview
NameBQ623733
Unique NameBQ623733
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length587
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623733 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.189e-13
Identity = 51/141 (36.17%), Postives = 71/141 (50.35%), Query Frame = 3
Query:    6 WFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 401
            WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G    +    Y GGS DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHL+DPVNNN
Sbjct:  133 WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG----GPLGE---VVDPLYPGGSFDPL----------GLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNN 256          
BLAST of BQ623733 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.189e-13
Identity = 51/142 (35.92%), Postives = 72/142 (50.70%), Query Frame = 3
Query:    6 WFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 401
            WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G     G +K Y GG+ DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct:  130 WFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYR----VGGGPLGE----GLDKIYPGGAFDPL----------GLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 253          
BLAST of BQ623733 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.189e-13
Identity = 51/141 (36.17%), Postives = 70/141 (49.65%), Query Frame = 3
Query:    6 WFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 401
            WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G         Y GGS DP               D ++  + ++KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:  131 WFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG----GPLGEVID---PLYPGGSFDPL----------GLADDPEAFAELEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254          
BLAST of BQ623733 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.859e-13
Identity = 51/141 (36.17%), Postives = 69/141 (48.94%), Query Frame = 3
Query:    6 WFQTGV-IPPAGTYNYWADPY--------TLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 401
            WF+ G  I   G  +Y   P          ++  ++ LMG  E  R       G +G    +    Y GG+ DP               D  +  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:  143 WFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAG----GPLGE---VTDPIYPGGNFDPL----------GLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 266          
BLAST of BQ623733 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.859e-13
Identity = 51/141 (36.17%), Postives = 71/141 (50.35%), Query Frame = 3
Query:    6 WFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 401
            WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G    +    Y GGS DP               D ++  + K+KE+K GRLAML++ G+FVQ +VTG GP +NL DH+ADPVNNN
Sbjct:  130 WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG----GPLGE---VVDPLYPGGSFDPL----------GLADDPEAFGELKVKELKKGRLAMLSMFGFFVQAIVTGKGPLENLADHIADPVNNN 253          
BLAST of BQ623733 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.859e-13
Identity = 37/75 (49.33%), Postives = 48/75 (64.00%), Query Frame = 3
Query:  177 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 401
            Y GGS DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLA+PVNNN
Sbjct:  169 YPGGSFDPL----------ALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVNNN 233          
BLAST of BQ623733 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.859e-13
Identity = 51/142 (35.92%), Postives = 72/142 (50.70%), Query Frame = 3
Query:    6 WFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYL-GGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 401
            WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G++G     G +  L GG+ DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct:  131 WFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYR----VGGGTLGE----GLDPLLPGGAFDPL----------GLADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANN 254          
BLAST of BQ623733 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.734e-13
Identity = 50/142 (35.21%), Postives = 71/142 (50.00%), Query Frame = 3
Query:    6 WFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 401
            WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G     G +  Y GG+ DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct:  129 WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYR----VGGGPLGE----GLDPLYPGGAFDPL----------GLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPVANN 252          
BLAST of BQ623733 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.877e-13
Identity = 36/75 (48.00%), Postives = 47/75 (62.67%), Query Frame = 3
Query:  177 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 401
            Y GGS DP              +D ++  + K+KE KNGRLAM ++ G+F+Q +VTG GP +NL DHL DPVNNN
Sbjct:  191 YPGGSFDPL----------GLAEDPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDPVNNN 255          
BLAST of BQ623733 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.370e-13
Identity = 51/141 (36.17%), Postives = 70/141 (49.65%), Query Frame = 3
Query:    6 WFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 401
            WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G    +    Y GGS DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLA PVNNN
Sbjct:  128 WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAG----GPLGE---VTDPIYPGGSFDPL----------GLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAGPVNNN 251          
The following BLAST results are available for this feature:
BLAST of BQ623733 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
CB28_PEA2.189e-1336.17Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_TOBAC2.189e-1335.92Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB21_PETSP2.189e-1336.17Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB2A_PINSY2.859e-1336.17Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB22_MAIZE2.859e-1336.17Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_SOYBN2.859e-1349.33Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_PINTH2.859e-1335.92Chlorophyll a-b binding protein type I, chloroplas... [more]
CB21_LEMGI3.734e-1335.21Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_PETSP4.877e-1348.00Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB23_SOYBN6.370e-1336.17Chlorophyll a-b binding protein 3, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00824 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00824 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623733 ID=BQ623733; Name=BQ623733; organism=Citrus sinensis; type=EST; length=587bp
TGGCCTGGTTCCAAACCGGTGTGATCCCCCCAGCGGGAACATACAACTAC
TGGGCAGACCCTTACACACTTTTCGTCCTGGAAATGGCACTCATGGGATT
TGCCGAGCACCGGAGATTCCAAGACTGGGCAAATCCAGGATCAATGGGCA
GGCAATACTTCCTCGGATTCGAGAAATACTTGGGAGGATCCGGCGATCCG
GCTTACCCTGGAGGACCTCTATTCAACCCTCTGGGTCTTGGGAAAGATGA
GAAGTCAATGAAGGATTTCAAGCTCAAGGAAGTGAAGAATGGAAGATTGG
CAATGTTGGCAATCTTGGGTTACTTTGTTCAAGGTCTTGTTACAGGAGTT
GGGCCTTACCAGAACCTATTGGATCACTTGGCTGATCCTGTAAACAACAA
TGTTTTGACTAGCCTCAAGTTTCACTGAGAGAGAAATTTCTTGTTCATTG
CTTGGAATTATATATTCCAAGCCTTGTCATCCCCCACTCTGTTCTATTCT
ACTTTCCCCATTGTAAAATTATCTATGTGAAAAGTGAATGTAACTTGGCG
GAAATGACATGTTAATTGCTAAAAAAAAAAAAAAAAA
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