BQ623745

Overview
NameBQ623745
Unique NameBQ623745
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length507
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623745 vs. ExPASy Swiss-Prot
Match: PSA2_XENLA (Proteasome subunit alpha type-2 OS=Xenopus laevis GN=psma2 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 5.093e-12
Identity = 45/139 (32.37%), Postives = 70/139 (50.36%), Query Frame = 2
Query:    8 YGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAIS 424
            Y   +P   L + +A   Q YTQ   +RP GV  ++   DE   P LF+ DP+G +F  KAT+ G        FLEK+   D     ++ + TAI TL+   +       IEVG+ ++    F+ L+  E+ ++L AI+
Sbjct:  101 YQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLIAGWDEG-RPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNED--LELEDAIHTAILTLKESFEGQMTEDNIEVGICNEAG--FKRLTPAEVKDYLAAIA 234          
BLAST of BQ623745 vs. ExPASy Swiss-Prot
Match: PSMA_METPE (Proteasome subunit alpha OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=psmA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.652e-12
Identity = 37/140 (26.43%), Postives = 71/140 (50.71%), Query Frame = 2
Query:    8 YGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISE 427
            Y  ++ V++L+K + D  Q YTQ    RP G   ++  I +    RLF+ DP+G    +KAT  G+     +   E++   +P  + ++ +   +  L +  +  F  + +E+GVV+ + P FR +S +E+   +  I +
Sbjct:  104 YDEQIDVEMLSKKLCDHMQTYTQFGGARPYGTALLIAGISDGQF-RLFETDPSGTLLEYKATGIGIGRNAVMKVFEEEY--NPEASIRDAILLGLKALHAATEGKFDVNTVEIGVVNNDTPAFRKMSRQEVASFVEQIEQ 240          
BLAST of BQ623745 vs. ExPASy Swiss-Prot
Match: PSMA_PYRKO (Proteasome subunit alpha OS=Pyrococcus kodakaraensis GN=psmA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.688e-12
Identity = 41/138 (29.71%), Postives = 73/138 (52.90%), Query Frame = 2
Query:    8 YGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAI 421
            YG  +P+ VL K I D  Q +TQ+  +RP G   ++  ++E+  P LF+ DP+G +F  KA + G     A+   E+  ++D      + ++ AI  L   L+E   A  IEV  ++ +   ++ L  EE+++++  I
Sbjct:  105 YGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAGVNEK--PELFETDPSGAYFEWKAVAIGSGRNTAMAIFEEHYRDD--IGKDDAIKLAILALAKTLEEP-TAEGIEVAYITMDEKRWKKLPREELEKYINEI 237          
BLAST of BQ623745 vs. ExPASy Swiss-Prot
Match: PSMA_PYRAE (Proteasome subunit alpha OS=Pyrobaculum aerophilum GN=psmA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.688e-12
Identity = 44/141 (31.21%), Postives = 73/141 (51.77%), Query Frame = 2
Query:    5 KYGYEMPVDV--LAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAI 421
            ++ Y+ P+DV  L K + +  Q YTQ    RP GV  ++  +D   G RL++ DP+G + G+ AT+ G +      FLEK  K D      E ++ A+  L S + E   ++ +EV   + E  + R +S +E+   LT +
Sbjct:  101 RFIYDEPIDVEFLTKAVCNLKQQYTQFGGARPFGVALLIAGVDRH-GARLYQTDPSGVYIGYFATAIGAESGTITEFLEKNYKFD--MEMGECIELALKALASAV-EITDSANVEVAYATIEEKKMRKMSQDEVASLLTKL 237          
BLAST of BQ623745 vs. ExPASy Swiss-Prot
Match: PSMA1_HALVO (Proteasome subunit alpha 1 OS=Halobacterium volcanii GN=psmA1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.688e-12
Identity = 43/138 (31.16%), Postives = 68/138 (49.28%), Query Frame = 2
Query:    5 KYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTA 418
            +YG  + ++ L K + D  Q YTQ    RP GV  ++  + E   PRL++ DP+G  +  KA S G    +    LE+  ++D   T  E ++ A+  + S   E      ++V  VS E   F  LS +EI+ +L A
Sbjct:  104 RYGEPIGIETLTKEVTDHIQQYTQVGGARPFGVALLIGGV-ENGTPRLYETDPSGTPYEWKAVSIGADRGDHQEHLEENFRDD--LTLDEGIELALEAIASTSDEGTAPDGVDVATVSAETERFVELSNDEIESYLEA 238          
BLAST of BQ623745 vs. ExPASy Swiss-Prot
Match: PSA2_SCHPO (Probable proteasome subunit alpha type-2 OS=Schizosaccharomyces pombe GN=SPCC1442.06 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.688e-12
Identity = 41/128 (32.03%), Postives = 65/128 (50.78%), Query Frame = 2
Query:    8 YGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSI 391
            Y    P  +L + IA   Q  TQ   +RP GV  +V  +DE+ GP L++ DP+G +F  KAT+ G     A  FLEK+  ++      + V TAI  L+   + +     IE+ VVS +  +  ++ +
Sbjct:  101 YNEYPPTKILVQEIASVMQESTQSGGVRPFGVSLLVAGMDEK-GPSLYQVDPSGTYFAWKATAIGKSSTAAKTFLEKRYNDE--LELDDAVHTAILALKETFEGELTEDNIEIAVVSTKPTDSGIVGV 225          
BLAST of BQ623745 vs. ExPASy Swiss-Prot
Match: PSA2_HUMAN (Proteasome subunit alpha type-2 OS=Homo sapiens GN=PSMA2 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 8.688e-12
Identity = 45/139 (32.37%), Postives = 70/139 (50.36%), Query Frame = 2
Query:    8 YGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAIS 424
            Y   +P   L + +A   Q YTQ   +RP GV  ++   +E   P LF+ DP+G +F  KAT+ G        FLEK+   D     ++ + TAI TL+   +       IEVG+ ++    FR L+  E+ ++L AI+
Sbjct:  101 YQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEG-RPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNED--LELEDAIHTAILTLKESFEGQMTEDNIEVGICNEAG--FRRLTPTEVKDYLAAIA 234          
BLAST of BQ623745 vs. ExPASy Swiss-Prot
Match: PSA2_BOVIN (Proteasome subunit alpha type-2 OS=Bos taurus GN=PSMA2 PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 8.688e-12
Identity = 45/139 (32.37%), Postives = 70/139 (50.36%), Query Frame = 2
Query:    8 YGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAIS 424
            Y   +P   L + +A   Q YTQ   +RP GV  ++   +E   P LF+ DP+G +F  KAT+ G        FLEK+   D     ++ + TAI TL+   +       IEVG+ ++    FR L+  E+ ++L AI+
Sbjct:  101 YQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEG-RPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNED--LELEDAIHTAILTLKESFEGQMTEDNIEVGICNEAG--FRRLTPTEVKDYLAAIA 234          
BLAST of BQ623745 vs. ExPASy Swiss-Prot
Match: PSA1B_ARATH (Proteasome subunit alpha type-1-B OS=Arabidopsis thaliana GN=PAF2 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 8.688e-12
Identity = 45/136 (33.09%), Postives = 75/136 (55.15%), Query Frame = 2
Query:    2 FKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ-EDFKASEIEVGVVSKENPEFRVLSIEEIDE 406
            F Y   +PV  L   +ADK+QV TQ ++ RP GV  +V  +DE  G  L+   P+G++F ++A + G + Q A  +LE+K ++    + ++ ++ AI  ++  LQ E  K+S   V V+  + P F  L  E I +
Sbjct:   97 FTYESPLPVGRLVVHLADKAQVCTQRSWKRPYGVGLLVGGLDES-GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERKFESFQESSKEDLIKDAIMAIRETLQGETLKSSLCTVSVLGVDEP-FHFLDQESIQK 230          
BLAST of BQ623745 vs. ExPASy Swiss-Prot
Match: PSA2_RAT (Proteasome subunit alpha type-2 OS=Rattus norvegicus GN=Psma2 PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 1.135e-11
Identity = 45/139 (32.37%), Postives = 70/139 (50.36%), Query Frame = 2
Query:    8 YGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAIS 424
            Y   +P   L + +A   Q YTQ   +RP GV  ++   +E   P LF+ DP+G +F  KAT+ G        FLEK+   D     ++ + TAI TL+   +       IEVG+ ++    FR L+  E+ ++L AI+
Sbjct:  101 YQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEG-RPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNED--LELEDAIHTAILTLKESFEGQMTEDNIEVGICNEAG--FRRLTPTEVRDYLAAIA 234          
The following BLAST results are available for this feature:
BLAST of BQ623745 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
PSA2_XENLA5.093e-1232.37Proteasome subunit alpha type-2 OS=Xenopus laevis ... [more]
PSMA_METPE6.652e-1226.43Proteasome subunit alpha OS=Methanosphaerula palus... [more]
PSMA_PYRKO8.688e-1229.71Proteasome subunit alpha OS=Pyrococcus kodakaraens... [more]
PSMA_PYRAE8.688e-1231.21Proteasome subunit alpha OS=Pyrobaculum aerophilum... [more]
PSMA1_HALVO8.688e-1231.16Proteasome subunit alpha 1 OS=Halobacterium volcan... [more]
PSA2_SCHPO8.688e-1232.03Probable proteasome subunit alpha type-2 OS=Schizo... [more]
PSA2_HUMAN8.688e-1232.37Proteasome subunit alpha type-2 OS=Homo sapiens GN... [more]
PSA2_BOVIN8.688e-1232.37Proteasome subunit alpha type-2 OS=Bos taurus GN=P... [more]
PSA1B_ARATH8.688e-1233.09Proteasome subunit alpha type-1-B OS=Arabidopsis t... [more]
PSA2_RAT1.135e-1132.37Proteasome subunit alpha type-2 OS=Rattus norvegic... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00836 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00836 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623745 ID=BQ623745; Name=BQ623745; organism=Citrus sinensis; type=EST; length=507bp
CTTCAAATATGGATATGAAATGCCTGTGGATGTGTTAGCCAAATGGATTG
CAGACAAATCACAAGTATATACTCAACATGCTTATATGAGACCACTTGGT
GTAGTTGCTATGGTTTTGAGTATTGACGAAGAATGTGGACCTCGCCTCTT
TAAGTGTGACCCTGCTGGCCATTTCTTTGGCCACAAGGCAACAAGTGCTG
GATTGAAGGAGCAAGAGGCAATTAATTTCTTGGAGAAGAAGATGAAGAAT
GATCCTGCGTTTACCTTTCAAGAAACTGTGCAGACTGCAATTTCCACCCT
GCAATCAGTCCTGCAAGAGGATTTTAAGGCGAGTGAGATTGAGGTTGGCG
TGGTGAGCAAGGAGAATCCAGAATTCAGAGTTTTGTCCATCGAGGAGATC
GATGAGCACTTGACTGCTATAAGTGAACGAGATTAGGAGGTGGTTTCACG
CCCCATCATAAATGCTGAAACCAAAAAACAAAAATGCTTTTCCCTGTATC
TTGAATT
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