BQ623788

Overview
NameBQ623788
Unique NameBQ623788
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length482
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623788 vs. ExPASy Swiss-Prot
Match: BGAL7_ARATH (Beta-galactosidase 7 OS=Arabidopsis thaliana GN=BGAL7 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 1.850e-18
Identity = 56/140 (40.00%), Postives = 74/140 (52.86%), Query Frame = 3
Query:   42 GLWEQVYLTADASDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVK-LRAGVNKISLLSTSVGLPNVGTHFEKWNAGVLGPVTL---KGLNEGTRDISKQKWTYKIGLKG 449
            GL +Q  +T DASDYLWYMT +++D  +          L + S  H L  ++NG+  G  +         F + V  L  G N ISLLS SVGL N G  FE    G+ GPV+L   KG     +D+S+ +W YKIGL G
Sbjct:  458 GLVDQKDVTNDASDYLWYMTRLHLDKKDPLWSRNMT--LRVHSNAHVLHAYVNGKYVGNQFVKDGKFDYRFERKVNHLVHGTNHISLLSVSVGLQNYGPFFESGPTGINGPVSLVGYKGEETIEKDLSQHQWDYKIGLNG 595          
BLAST of BQ623788 vs. ExPASy Swiss-Prot
Match: BGA16_ARATH (Beta-galactosidase 16 OS=Arabidopsis thaliana GN=BGAL16 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 5.383e-18
Identity = 53/161 (32.92%), Postives = 80/161 (49.69%), Query Frame = 3
Query:    3 TASSTDDNTFTKDGLWEQVYLTADASDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRAGVNKISLLSTSVGLPNVGTHFEKWNAGVLGPVTLKGLNEGTR-DISKQKWTYKIGLKGEALSLHTVSGS 482
            T  S  + +   + L E +  T D SDYLW  T             G   +L +   GHAL  F+NG+  G+++G+ +  +    KN+ L  G N ++LLS  VGLPN G H E+    V+G  ++K  N   +   +   W Y++GLKGE   ++T  GS
Sbjct:  442 TVPSFSETSIRSESLLEHMNTTQDTSDYLWQTTRFQ-------QSEGAPSVLKVNHLGHALHAFVNGRFIGSMHGTFKAHRFLLEKNMSLNNGTNNLALLSVMVGLPNSGAHLER---RVVGSRSVKIWNGRYQLYFNNYSWGYQVGLKGEKFHVYTEDGS 592          
BLAST of BQ623788 vs. ExPASy Swiss-Prot
Match: BGA12_ORYSJ (Beta-galactosidase 12 OS=Oryza sativa subsp. japonica GN=Os09g0539200 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 9.183e-18
Identity = 50/143 (34.97%), Postives = 75/143 (52.45%), Query Frame = 3
Query:   51 EQVYLTADASDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRAGVNKISLLSTSVGLPNVGTHFEKWNAGVLGPVTLKGLNEGTRDISKQKWTYKIGLKGEALSLHTVSG 479
            EQ   T D SDYLWY T   ++S++   +    P++ I S  HA+  F N    GT  GS       F K + LR G+N I++LS+S+G+ + G    +   G+   V ++GLN GT D+    W +K  L+GE   ++T  G
Sbjct:  470 EQYNQTKDTSDYLWYTTSFRLESDDLPFRRDIRPVIQIKSTAHAMIGFANDAFVGTGRGSKREKSFVFEKPMDLRVGINHIAMLSSSMGMKDSGGELVEVKGGIQDCV-VQGLNTGTLDLQGNGWGHKARLEGEDKEIYTEKG 611          
BLAST of BQ623788 vs. ExPASy Swiss-Prot
Match: BGAL7_ORYSJ (Beta-galactosidase 7 OS=Oryza sativa subsp. japonica GN=Os05g0428100 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.732e-16
Identity = 50/157 (31.85%), Postives = 86/157 (54.78%), Query Frame = 3
Query:   24 NTFTKDGLWEQVYLTADASDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLENPK-LTFSKNVKLRAGVNKISLLSTSVGLPNVGTHFEKWNAGVLGPVTLKGLNEGTRD---ISKQKWTYKIGLKGEALSLHTVSGS 482
            +T+T + L+EQ+  T D +DYLWY+      +++G     Q   L + S  H L  F+N +  G+V+GS + P+ +  + ++ L+ G N ISLLS  VG P+ G + E+   G    +   G+ +G +    ++   W Y++GL GE  S++T  G+
Sbjct:  419 STYTGNQLFEQLTTTKDETDYLWYIVSYKNRASDG----NQIAHLYVKSLAHILHAFVNNEYVGSVHGSHDGPRNIVLNTHMSLKEGDNTISLLSVMVGSPDSGAYMERRTFG----IQTVGIQQGQQPMHLLNNDLWGYQVGLFGEKDSIYTQEGT 567          
BLAST of BQ623788 vs. ExPASy Swiss-Prot
Match: BGAL6_ARATH (Beta-galactosidase 6 OS=Arabidopsis thaliana GN=BGAL6 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.265e-15
Identity = 49/143 (34.27%), Postives = 75/143 (52.45%), Query Frame = 3
Query:   39 DGLWEQVYLTADASDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRAGVNKISLLSTSVGLPNVGTHFEKWNAGVLGPVTLKGLNEGTRDISKQKWTYKIGLKGEALSLH 467
            + L E   LT D +DYLWY +   +DS         +P +   S+GH + VF+N  L+G+ +GS +   +     V L  G N IS+LS  VGLP+ G + E+ + G L  V +        D+S+ +W Y +GL GE + L+
Sbjct:  461 NALLEHTNLTKDKTDYLWYTSSFKLDSP------CTNPSIYTESSGHVVHVFVNNALAGSGHGSRDIRVVKLQAPVSLINGQNNISILSGMVGLPDSGAYMERRSYG-LTKVQISCGGTKPIDLSRSQWGYSVGLLGEKVRLY 596          
BLAST of BQ623788 vs. ExPASy Swiss-Prot
Match: BGA14_ORYSJ (Beta-galactosidase 14 OS=Oryza sativa subsp. japonica GN=Os10g0340600 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.529e-12
Identity = 48/146 (32.88%), Postives = 64/146 (43.84%), Query Frame = 3
Query:   18 DDNTFTKDGLWEQVYLTADASDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRAGVNKISLLSTSVGLPNVGTHFEKWNAGVL-GPVTLKGLNEGTRDISKQKWTYKIGLKGE 452
            +   F K+ L EQ+  T D SDYLWY T +       +       +L + + GH L  F+NG+L G  Y   EN   TF                   +  PN G  FE   AG++ GPV L   +    D+S   W+YK GL GE
Sbjct:  460 EKGNFRKNELLEQIVTTTDQSDYLWYRTSLEHKGEGSY-------VLYVNTTGHELYAFVNGKLVGQQYSPNEN--FTF------------------QLKSPNYGGSFELLPAGIVGGPVKLIDSSGSAIDLSNNSWSYKAGLAGE 578          
The following BLAST results are available for this feature:
BLAST of BQ623788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
BGAL7_ARATH1.850e-1840.00Beta-galactosidase 7 OS=Arabidopsis thaliana GN=BG... [more]
BGA16_ARATH5.383e-1832.92Beta-galactosidase 16 OS=Arabidopsis thaliana GN=B... [more]
BGA12_ORYSJ9.183e-1834.97Beta-galactosidase 12 OS=Oryza sativa subsp. japon... [more]
BGAL7_ORYSJ1.732e-1631.85Beta-galactosidase 7 OS=Oryza sativa subsp. japoni... [more]
BGAL6_ARATH4.265e-1534.27Beta-galactosidase 6 OS=Arabidopsis thaliana GN=BG... [more]
BGA14_ORYSJ7.529e-1232.88Beta-galactosidase 14 OS=Oryza sativa subsp. japon... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00879 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00879 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623788 ID=BQ623788; Name=BQ623788; organism=Citrus sinensis; type=EST; length=482bp
GAACTGCTTCTTCTACTGACGATAATACATTTACAAAAGATGGGTTATGG
GAACAAGTATATCTTACTGCAGATGCTTCAGATTATTTGTGGTACATGAC
AGATGTAAATATAGACTCCAACGAAGGATTTCTGAAGAATGGACAAGATC
CCCTTCTTACCATTTGGTCAGCCGGCCATGCCCTGCAGGTTTTCATTAAT
GGTCAACTATCAGGAACTGTTTATGGTTCATTAGAGAACCCTAAATTGAC
ATTCAGTAAGAATGTGAAACTGAGAGCTGGTGTTAATAAGATTTCTCTTC
TAAGTACTTCTGTAGGCCTTCCGAATGTGGGCACACACTTTGAGAAATGG
AATGCTGGGGTTCTTGGGCCAGTAACTTTGAAGGGTCTAAATGAGGGGAC
GAGAGACATATCTAAGCAAAAGTGGACTTACAAGATTGGTCTAAAAGGTG
AGGCCTTAAGCCTTCATACTGTTAGTGGGAGT
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